Edit and Resubmit [Sign in above to save your search strategy] Formatting options Download How to read this page Blast report description

Formatting options
Show	Alignment as Old View Reset form to defaults [?]
Alignment View	[?]
Display	Graphical Overview Linkout Sequence Retrieval NCBI-gi CDS feature [?]
Masking	Character: Color: [?]
Limit results	Descriptions: Graphical overview: Alignments: Line length: [?]
	Organism Type common name, binomial, taxid, or group name. Only 20 top taxa will be shown. Exclude [?]
	Entrez query: [?]
	Expect Min: Expect Max: [?]
	Percent Identity Min: Percent Identity Max: [?]
Format for	PSI-BLAST with inclusion threshold: [?] Format for PSI-BLAST: The Position-Specific Iterated BLAST (PSI-BLAST) program performs iterative searches with a protein query, in which sequences found in one round of search are used to build a custom score model for the next round. more... Inclusion Threshold: This sets the statistical significance threshold for including a sequence in the model used by PSI-BLAST to create the PSSM on the next iteration.

Download
Alignment Text XML ASN.1 JSON Seq-align Hit Table(text) Hit Table(csv) Multiple-file XML2 Single-file XML2 Multiple-file JSON Single-file JSON SAM	Search Strategies ASN.1	PSSM to restart search PSSM	[?]

The Download link provides BLAST output that may be used as input to another program. This includes parseable formats such as the tabular report or XML as well as the Search Strategy files read by the BLAST+ applications. More details on the parseable (XML, tabular, and ASN.1) reports can be found at https://www.ncbi.nlm.nih.gov/books/NBK153387/

The following formats are offered under the Alignment section:
1). "Text". Non-HTML standard BLAST report.
2). "XML". XML report based upon the DTD at https://www.ncbi.nlm.nih.gov/data_specs/dtd/NCBI_BlastOutput.dtd
3). "ASN.1". Alignment written out in Abstract Syntax Notation 1.
4). "JSON Seq-align". Alignment written out in JSON.
4). "Hit Table(text)". The tabular report as text.
5). "Hit Table(csv)". The tabular report ready for import into spread-sheet programs like Excel.
6). "XML2". New XML format described at ftp://ftp.ncbi.nlm.nih.gov/blast/documents/NEWXML/xml2.pdf.
7). "JSON". New JSON format described at ftp://ftp.ncbi.nlm.nih.gov/blast/documents/NEWXML/xml2.pdf.
8). "SAM". Sequence Alignment Map format.

XML2 and JSON can be downloaded either as one file per query (multiple-file) or one file for all queries (single-file). These formats are listed as Multiple-file XML2 (and JSON) or Single-file XML (and JSON).

The following report is offered under the Search Strategy section:
1). "ASN.1" Search Strategy. A record of the parameters, query, and database used in the search. This file can be used to start a stand-alone BLAST search, see https://www.ncbi.nlm.nih.gov/books/NBK1763/#CmdLineAppsManual.I455_BLAST_search_stra

Job title: E7Q0J:01361:11618

RID: VFSM9AFY01R (Expires on 09-13 21:35 pm)

Query ID: lcl|Query_205783; lcl|Query_205783
Description: E7Q0J:01361:11618
Molecule type: nucleic acid
Query Length: 214


Database Name: nr
Description: Nucleotide collection (nt) See details
Program: BLASTN 2.7.0+ Citation

Reference

Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14.

Reference - database indexing

Aleksandr Morgulis, George Coulouris, Yan Raytselis, Thomas L. Madden, Richa Agarwala, Alejandro A. Schäffer (2008), "Database Indexing for Production MegaBLAST Searches", Bioinformatics 24:1757-1764.

Other reports: Search Summary [Distance tree of results]

Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	10
Hitlist size	100
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Sep 7, 2017 4:56 AM
Number of letters	-2,056,566,439
Number of sequences	44,407,744
Entrez query	none

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	33
Effective length of query	181
Effective length of database	155391767961
Effective search space	28125910000941
Effective search space used	28125910000941

Descriptions

, Reading indexes 1-5, displaying indexes 1-5

Sequences producing significant alignments:

Select:All None Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1Select seq gb\|CP017578.1\|	Sphingomonas melonis TY, complete genome	195	195	93%	6e-46	84%	CP017578.1
2Select seq gb\|CP009571.1\|	Sphingomonas taxi strain ATCC 55669, complete genome	161	161	86%	6e-36	82%	CP009571.1
3Select seq gb\|HQ291125.1\|	Nostoc flagelliforme str. Sunitezuoqi clone 53 genomic sequence	159	159	87%	2e-35	82%	HQ291125.1
4Select seq gb\|CP016545.1\|	Altererythrobacter namhicola strain JCM 16345, complete genome	134	134	68%	1e-27	83%	CP016545.1
5Select seq gb\|CP017057.1\|	Erythrobacter litoralis strain DSM 8509, complete genome	132	132	61%	4e-27	85%	CP017057.1
6Select seq gb\|CP011805.1\|	Altererythrobacter marensis strain KCTC 22370, complete genome	122	122	60%	3e-24	84%	CP011805.1
7Select seq gb\|CP017113.1\|	Porphyrobacter sp. LM 6, complete genome	89.8	89.8	68%	3e-14	78%	CP017113.1

Alignments

Download GenBank Graphics Next Previous Descriptions

Sphingomonas melonis TY, complete genome

Sequence ID: CP017578.1Length: 4156476Number of Matches: 1

Related Information

Range 1: 1676912 to 1677112GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
195 bits(105)	6e-46()	169/201(84%)	0/201(0%)	Plus/Plus

Query  8        GGCGCGGTGCTGGTCGGTCTAACCGCAATCTATGCCTGGGCGACGGTTGCCTTTGGGTTC  67
                ||||||||||||||||  || || || |||||||||||||||||||| || || ||  | 
Sbjct  1676912  GGCGCGGTGCTGGTCGTGCTGACGGCGATCTATGCCTGGGCGACGGTGGCGTTCGGCCTG  1676971

Query  68       CGGTTTTCCAACCTGACGCATCGCGGCATTTTGACGCACGGGCCGTATGCCTTTTCGCGC  127
                || ||||||||||| ||||||||||||||  |||| |||||||| |||| ||  ||||| 
Sbjct  1676972  CGCTTTTCCAACCTCACGCATCGCGGCATCCTGACCCACGGGCCTTATGGCTGGTCGCGT  1677031

Query  128      CACCCCGCCTATCTGTCGAAGAACCTGTTCTGGTGGATTTCAACCGTGCCGGTGCTGACG  187
                || || |||||||||||||||||||||||||||||| | || ||  ||||| ||||||||
Sbjct  1677032  CATCCGGCCTATCTGTCGAAGAACCTGTTCTGGTGGCTGTCGACGCTGCCGCTGCTGACG  1677091

Query  188      ACGGGGTCGTGGCTGGATGCG  208
                |||||||||| | | ||||||
Sbjct  1677092  ACGGGGTCGTTGGTCGATGCG  1677112

Download GenBank Graphics Next Previous Descriptions

Sphingomonas taxi strain ATCC 55669, complete genome

Sequence ID: CP009571.1Length: 3859099Number of Matches: 1

Related Information

Range 1: 776196 to 776381GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
161 bits(87)	6e-36()	154/187(82%)	2/187(1%)	Plus/Minus

Query  29      ACCGCAATCTATGCCTGGGCGACGGTTGCCTTTGGGTTCCGGTTTTCCAACCTGACGCAT  88
               |||||  |||| |||||||||||||| || || ||| | || || |||||||| || || 
Sbjct  776381  ACCGCGGTCTACGCCTGGGCGACGGTCGCATTCGGGCTGCGCTTCTCCAACCTCACCCAC  776322

Query  89      CGCGGCATTTTGACGCACGGGCCGTATGCCTTTTCGCGCCACCCCGCCTATCTGTCGAAG  148
               ||||||||  |||||||||| || |||||||  ||||| ||||| |||||||||||||||
Sbjct  776321  CGCGGCATCCTGACGCACGGTCCCTATGCCTGGTCGCGTCACCCGGCCTATCTGTCGAAG  776262

Query  149     AACCTGTTCTGGTGGATTTCAACCGTGCCGGTGCTGACGACGGG-GTCGTGGCTGGATGC  207
               ||||||||||||||| | || ||||||||| | |||||||||||   | ||| | || ||
Sbjct  776261  AACCTGTTCTGGTGGCTGTCGACCGTGCCGATCCTGACGACGGGCAGCCTGG-TCGACGC  776203

Query  208     GGTGCGC  214
               |||||||
Sbjct  776202  GGTGCGC  776196

Download GenBank Graphics Next Previous Descriptions

Nostoc flagelliforme str. Sunitezuoqi clone 53 genomic sequence

Sequence ID: HQ291125.1Length: 1221Number of Matches: 1

Related Information

Range 1: 43 to 232GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
159 bits(86)	2e-35()	157/191(82%)	5/191(2%)	Plus/Minus

Query  6    TCGGCGCGGTGCTGGTCGGTCTAACCGCAATCTATGCCTGGGCGACGGTTGCCTTTGGGT  65
            ||||||||||||||||||  || || ||||||||||||||||||||| | || || ||  
Sbjct  232  TCGGCGCGGTGCTGGTCGCACTGACGGCAATCTATGCCTGGGCGACGATGGCGTTCGGCC  173

Query  66   TCCGGTTTTCCAACCTGACGCATCGCGGCATTTTGACGCACGGGCCGTATGCCTTTTCG-  124
            |||| || |||||||| || || ||||||||  |||||||||| || ||||||||   | 
Sbjct  172  TCCGCTTCTCCAACCTCACCCACCGCGGCATCCTGACGCACGGACCCTATGCCTT-CAGC  114

Query  125  CGCCACCCCGCCTATCTGTCGAAGAACCTGTTCTGGTGGATTTCAACCGTGCCGGTGCT-  183
            |||||||| |||||||||||||||||||||||||||||| | || ||  | || ||||| 
Sbjct  113  CGCCACCCGGCCTATCTGTCGAAGAACCTGTTCTGGTGGCTGTCGACGATCCCCGTGCTC  54

Query  184  G--ACGACGGG  192
            |  ||||||||
Sbjct  53   GCCACGACGGG  43

Download GenBank Graphics Next Previous Descriptions

Altererythrobacter namhicola strain JCM 16345, complete genome

Sequence ID: CP016545.1Length: 2591679Number of Matches: 1

Related Information

Range 1: 2076942 to 2077088GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
134 bits(72)	1e-27()	122/147(83%)	0/147(0%)	Plus/Minus

Query  17       CTGGTCGGTCTAACCGCAATCTATGCCTGGGCGACGGTTGCCTTTGGGTTCCGGTTTTCC  76
                |||||||  || || || |||||||||||||| || || ||||||||  |||| ||||||
Sbjct  2077088  CTGGTCGCGCTGACGGCCATCTATGCCTGGGCCACCGTGGCCTTTGGCATCCGCTTTTCC  2077029

Query  77       AACCTGACGCATCGCGGCATTTTGACGCACGGGCCGTATGCCTTTTCGCGCCACCCCGCC  136
                ||||| ||  |||||||  |  ||||||| ||||| |||  |||  |||||||||| |||
Sbjct  2077028  AACCTCACCTATCGCGGTGTGCTGACGCATGGGCCATATCGCTTCACGCGCCACCCGGCC  2076969

Query  137      TATCTGTCGAAGAACCTGTTCTGGTGG  163
                |||||||||||||||||||||||||||
Sbjct  2076968  TATCTGTCGAAGAACCTGTTCTGGTGG  2076942

Download GenBank Graphics Next Previous Descriptions

Erythrobacter litoralis strain DSM 8509, complete genome

Sequence ID: CP017057.1Length: 3251353Number of Matches: 1

Related Information

Range 1: 2188343 to 2188473GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
132 bits(71)	4e-27()	111/131(85%)	0/131(0%)	Plus/Minus

Query  36       TCTATGCCTGGGCGACGGTTGCCTTTGGGTTCCGGTTTTCCAACCTGACGCATCGCGGCA  95
                ||||||||||||||||| ||||||| ||  |||| ||||| ||||| ||  |||||||| 
Sbjct  2188473  TCTATGCCTGGGCGACGATTGCCTTCGGCATCCGCTTTTCAAACCTCACCTATCGCGGCG  2188414

Query  96       TTTTGACGCACGGGCCGTATGCCTTTTCGCGCCACCCCGCCTATCTGTCGAAGAACCTGT  155
                |  ||||| |||||||||||  |||  | |||||||| ||||||||||||||||||||||
Sbjct  2188413  TGCTGACGAACGGGCCGTATCGCTTCACCCGCCACCCGGCCTATCTGTCGAAGAACCTGT  2188354

Query  156      TCTGGTGGATT  166
                |||||||| ||
Sbjct  2188353  TCTGGTGGCTT  2188343

Job title: E7Q0J:01361:11618

Graphic Summary

Distribution of the top 7 Blast Hits on 7 subject sequences [?]

Descriptions

Alignments