NCBI Blast:E7Q0J:01343:11638

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	Percent Identity Min: Percent Identity Max: [?]
Format for	PSI-BLAST with inclusion threshold: [?] Format for PSI-BLAST: The Position-Specific Iterated BLAST (PSI-BLAST) program performs iterative searches with a protein query, in which sequences found in one round of search are used to build a custom score model for the next round. more... Inclusion Threshold: This sets the statistical significance threshold for including a sequence in the model used by PSI-BLAST to create the PSSM on the next iteration.

Download
Alignment Text XML ASN.1 JSON Seq-align Hit Table(text) Hit Table(csv) Multiple-file XML2 Single-file XML2 Multiple-file JSON Single-file JSON SAM	Search Strategies ASN.1	PSSM to restart search PSSM	[?]

The Download link provides BLAST output that may be used as input to another program. This includes parseable formats such as the tabular report or XML as well as the Search Strategy files read by the BLAST+ applications. More details on the parseable (XML, tabular, and ASN.1) reports can be found at https://www.ncbi.nlm.nih.gov/books/NBK153387/

The following formats are offered under the Alignment section:
1). "Text". Non-HTML standard BLAST report.
2). "XML". XML report based upon the DTD at https://www.ncbi.nlm.nih.gov/data_specs/dtd/NCBI_BlastOutput.dtd
3). "ASN.1". Alignment written out in Abstract Syntax Notation 1.
4). "JSON Seq-align". Alignment written out in JSON.
4). "Hit Table(text)". The tabular report as text.
5). "Hit Table(csv)". The tabular report ready for import into spread-sheet programs like Excel.
6). "XML2". New XML format described at ftp://ftp.ncbi.nlm.nih.gov/blast/documents/NEWXML/xml2.pdf.
7). "JSON". New JSON format described at ftp://ftp.ncbi.nlm.nih.gov/blast/documents/NEWXML/xml2.pdf.
8). "SAM". Sequence Alignment Map format.

XML2 and JSON can be downloaded either as one file per query (multiple-file) or one file for all queries (single-file). These formats are listed as Multiple-file XML2 (and JSON) or Single-file XML (and JSON).

The following report is offered under the Search Strategy section:
1). "ASN.1" Search Strategy. A record of the parameters, query, and database used in the search. This file can be used to start a stand-alone BLAST search, see https://www.ncbi.nlm.nih.gov/books/NBK1763/#CmdLineAppsManual.I455_BLAST_search_stra

Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	28
Expect value	10
Hitlist size	100
Match/Mismatch scores	1,-2
Gapcosts	0,2.5
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date	Sep 7, 2017 4:56 AM
Number of letters	-2,056,566,439
Number of sequences	44,407,744
Entrez query	none

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.33271	1.28
K	0.620991	0.46
H	1.12409	0.85

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	33
Effective length of query	170
Effective length of database	155391767961
Effective search space	26416600553370
Effective search space used	26416600553370

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
1Select seq gb\|AC010853.11\|	Homo sapiens chromosome 18, clone RP11-349D12, complete sequence	375	375	100%	2e-100	100%	AC010853.11
2Select seq gb\|AC067796.11\|	Homo sapiens chromosome 18, clone RP11-609K12, complete sequence	375	375	100%	2e-100	100%	AC067796.11

Alignments

Download GenBank Graphics Next Previous Descriptions

Homo sapiens chromosome 18, clone RP11-349D12, complete sequence

Sequence ID: AC010853.11Length: 184396Number of Matches: 1

Related Information

Map Viewer-aligned genomic context

Range 1: 38014 to 38216GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
375 bits(203)	2e-100()	203/203(100%)	0/203(0%)	Plus/Minus

Query  1      GATGTACTAATTGACAGTTAGCTGCAAACAGACCCGCACTAGCAGTGGATGCCTTTCACA  60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  38216  GATGTACTAATTGACAGTTAGCTGCAAACAGACCCGCACTAGCAGTGGATGCCTTTCACA  38157

Query  61     GGTCAATGGCATGTGTATATTTCACAGAGGTCTTCATCCATCCAACCTCACTTTTCTACC  120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  38156  GGTCAATGGCATGTGTATATTTCACAGAGGTCTTCATCCATCCAACCTCACTTTTCTACC  38097

Query  121    AAATACCTTAGATTTCTCCTCTTTGTGCCCTTCCTCACAAATACTACAACAGTATATTTT  180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  38096  AAATACCTTAGATTTCTCCTCTTTGTGCCCTTCCTCACAAATACTACAACAGTATATTTT  38037

Query  181    TATATCCAATGAGCGCATTTAGA  203
              |||||||||||||||||||||||
Sbjct  38036  TATATCCAATGAGCGCATTTAGA  38014

Download GenBank Graphics Next Previous Descriptions

Homo sapiens chromosome 18, clone RP11-609K12, complete sequence

Sequence ID: AC067796.11Length: 201861Number of Matches: 1

Related Information

Map Viewer-aligned genomic context

Range 1: 182031 to 182233GenBank Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Identities	Gaps	Strand	Frame
375 bits(203)	2e-100()	203/203(100%)	0/203(0%)	Plus/Minus

Query  1       GATGTACTAATTGACAGTTAGCTGCAAACAGACCCGCACTAGCAGTGGATGCCTTTCACA  60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  182233  GATGTACTAATTGACAGTTAGCTGCAAACAGACCCGCACTAGCAGTGGATGCCTTTCACA  182174

Query  61      GGTCAATGGCATGTGTATATTTCACAGAGGTCTTCATCCATCCAACCTCACTTTTCTACC  120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  182173  GGTCAATGGCATGTGTATATTTCACAGAGGTCTTCATCCATCCAACCTCACTTTTCTACC  182114

Query  121     AAATACCTTAGATTTCTCCTCTTTGTGCCCTTCCTCACAAATACTACAACAGTATATTTT  180
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  182113  AAATACCTTAGATTTCTCCTCTTTGTGCCCTTCCTCACAAATACTACAACAGTATATTTT  182054

Query  181     TATATCCAATGAGCGCATTTAGA  203
               |||||||||||||||||||||||
Sbjct  182053  TATATCCAATGAGCGCATTTAGA  182031

Job title: E7Q0J:01343:11638

Graphic Summary

Distribution of the top 2 Blast Hits on 2 subject sequences [?]

Descriptions

Alignments