##gff-version 3
##source-version rtracklayer 1.34.1
##date 2017-05-10
##genome-build .	hg19
chrM	rtracklayer	sequence_feature	701	750	.	*	.	count=1653;fpk=33060;logOddScore=697.591918129056;pval=3.63286417885982e-21;pvalAdj=1.81643208942991e-20;CTL_count=4058;CTL_fpk=81160;CTL_logOddScore=-697.118115550299;eFDR=3.63286417885982e-21
chrM	rtracklayer	sequence_feature	951	1000	.	*	.	count=1706;fpk=34120;logOddScore=67.3698882673852;pval=0.152784274051559;pvalAdj=0.254640456752598;CTL_count=2250;CTL_fpk=45000;CTL_logOddScore=-66.0325673855627;eFDR=0.333333333333333
chrM	rtracklayer	sequence_feature	1351	1400	.	*	.	count=1701;fpk=34020;logOddScore=0.115510482670053;pval=0.446702070586132;pvalAdj=0.446702070586132;CTL_count=1680;CTL_fpk=33600;CTL_logOddScore=1.20306141963896;eFDR=0.446702070586132
chrM	rtracklayer	sequence_feature	2751	2800	.	*	.	count=1706;fpk=34120;logOddScore=91.2340234581788;pval=0.0900303431343378;pvalAdj=0.225075857835844;CTL_count=2346;CTL_fpk=46920;CTL_logOddScore=-89.8967025763563;eFDR=0.5
chrM	rtracklayer	sequence_feature	3151	3200	.	*	.	count=1769;fpk=35380;logOddScore=23.1248337140912;pval=0.330445937611272;pvalAdj=0.41305742201409;CTL_count=2020;CTL_fpk=40400;CTL_logOddScore=-22.6427171161724;eFDR=0.330445937611272
chr1	rtracklayer	sequence_feature	17067101	17067200	.	*	.	count=12485;fpk=124850;logOddScore=328.427706474018;pval=0;pvalAdj=0;CTL_count=2576;CTL_fpk=25760;CTL_logOddScore=-151.91030530912;eFDR=0.666666666666667
chr1	rtracklayer	sequence_feature	91853051	91853100	.	*	.	count=3642;fpk=72840;logOddScore=105.871615542093;pval=0;pvalAdj=0;CTL_count=3955;CTL_fpk=79100;CTL_logOddScore=-13.6301833554566;eFDR=0.666666666666667
chr1	rtracklayer	sequence_feature	108113051	108113100	.	*	.	count=5383;fpk=107660;logOddScore=399.546889275528;pval=0;pvalAdj=0;CTL_count=6751;CTL_fpk=135020;CTL_logOddScore=-13.6301833554566;eFDR=0.666666666666667
chr1	rtracklayer	sequence_feature	145277351	145277400	.	*	.	count=7267;fpk=145340;logOddScore=138.64178562808;pval=0;pvalAdj=0;CTL_count=9020;CTL_fpk=180400;CTL_logOddScore=-13.6301833554566;eFDR=0.666666666666667
chr1	rtracklayer	sequence_feature	149823151	149823200	.	*	.	count=3929;fpk=78580;logOddScore=199.089803845277;pval=0;pvalAdj=0;CTL_count=2280;CTL_fpk=45600;CTL_logOddScore=-13.6301833554566;eFDR=0.666666666666667
chr1	rtracklayer	sequence_feature	149824651	149824700	.	*	.	count=5209;fpk=104180;logOddScore=396.621409999823;pval=0;pvalAdj=0;CTL_count=2512;CTL_fpk=50240;CTL_logOddScore=-13.6301833554566;eFDR=0.666666666666667
chr2	rtracklayer	sequence_feature	133012166	133012220	.	*	.	count=5143;fpk=93509.0909090909;logOddScore=101.369433588252;pval=0;pvalAdj=0;CTL_count=3546;CTL_fpk=64472.7272727273;CTL_logOddScore=0;eFDR=0
chr2	rtracklayer	sequence_feature	133012441	133012550	.	*	.	count=16249;fpk=147718.181818182;logOddScore=436.91146614259;pval=0;pvalAdj=0;CTL_count=19728;CTL_fpk=179345.454545455;CTL_logOddScore=0;eFDR=0
chr2	rtracklayer	sequence_feature	133012716	133012880	.	*	.	count=23815;fpk=144333.333333333;logOddScore=396.09984587377;pval=0;pvalAdj=0;CTL_count=22214;CTL_fpk=134630.303030303;CTL_logOddScore=0;eFDR=0
chr2	rtracklayer	sequence_feature	133013156	133013210	.	*	.	count=6772;fpk=123127.272727273;logOddScore=441.517262195483;pval=0;pvalAdj=0;CTL_count=4243;CTL_fpk=77145.4545454545;CTL_logOddScore=0;eFDR=0
chr2	rtracklayer	sequence_feature	133036586	133036640	.	*	.	count=6474;fpk=117709.090909091;logOddScore=408.838294166495;pval=0;pvalAdj=0;CTL_count=5678;CTL_fpk=103236.363636364;CTL_logOddScore=0;eFDR=0
chr2	rtracklayer	sequence_feature	133038621	133038675	.	*	.	count=6099;fpk=110890.909090909;logOddScore=349.986985602305;pval=0;pvalAdj=0;CTL_count=9390;CTL_fpk=170727.272727273;CTL_logOddScore=0;eFDR=0
chr2	rtracklayer	sequence_feature	133038896	133039005	.	*	.	count=10928;fpk=99345.4545454545;logOddScore=195.160224121026;pval=0;pvalAdj=0;CTL_count=13489;CTL_fpk=122627.272727273;CTL_logOddScore=0;eFDR=0
chr2	rtracklayer	sequence_feature	191402641	191402695	.	*	.	count=7931;fpk=144200;logOddScore=461.037690647141;pval=0;pvalAdj=0;CTL_count=7576;CTL_fpk=137745.454545455;CTL_logOddScore=0;eFDR=0
chr4	rtracklayer	sequence_feature	1976461	1976520	.	*	.	count=995;fpk=16583.3333333333;logOddScore=704.795559133;pval=0;pvalAdj=0;CTL_count=322;CTL_fpk=5366.66666666667;CTL_logOddScore=-13.8760897319038;eFDR=0.4
chr4	rtracklayer	sequence_feature	7584361	7584420	.	*	.	count=1603;fpk=26716.6666666667;logOddScore=78.7248225017682;pval=0;pvalAdj=0;CTL_count=1478;CTL_fpk=24633.3333333333;CTL_logOddScore=476.165863846626;eFDR=0.4
chr4	rtracklayer	sequence_feature	76807201	76807320	.	*	.	count=1704;fpk=14200;logOddScore=433.443173655853;pval=0;pvalAdj=0;CTL_count=2150;CTL_fpk=17916.6666666667;CTL_logOddScore=235.579013122093;eFDR=0.4
chr4	rtracklayer	sequence_feature	76807381	76807440	.	*	.	count=549;fpk=9150;logOddScore=464.371937164794;pval=0;pvalAdj=0;CTL_count=562;CTL_fpk=9366.66666666667;CTL_logOddScore=-13.8760897319038;eFDR=0.4
chr4	rtracklayer	sequence_feature	134082901	134082960	.	*	.	count=940;fpk=15666.6666666667;logOddScore=373.238122672679;pval=0;pvalAdj=0;CTL_count=1189;CTL_fpk=19816.6666666667;CTL_logOddScore=315.874297615041;eFDR=0.4
chr5	rtracklayer	sequence_feature	174541701	174541750	.	*	.	count=1836;fpk=36720;logOddScore=69.9740998185793;pval=0;pvalAdj=0;CTL_count=1612;CTL_fpk=32240;CTL_logOddScore=0;eFDR=0
chr5	rtracklayer	sequence_feature	180600701	180600750	.	*	.	count=1528;fpk=30560;logOddScore=55.7499545180857;pval=0;pvalAdj=0;CTL_count=780;CTL_fpk=15600;CTL_logOddScore=0;eFDR=0
chr6	rtracklayer	sequence_feature	4428271	4428325	.	*	.	count=2648;fpk=48145.4545454545;logOddScore=66.7501455118235;pval=0;pvalAdj=0;CTL_count=1420;CTL_fpk=25818.1818181818;CTL_logOddScore=0;eFDR=0
chr6	rtracklayer	sequence_feature	26031776	26031830	.	*	.	count=1909;fpk=34709.0909090909;logOddScore=125.787124189879;pval=0;pvalAdj=0;CTL_count=751;CTL_fpk=13654.5454545455;CTL_logOddScore=0;eFDR=0
chr6	rtracklayer	sequence_feature	26055921	26055975	.	*	.	count=1784;fpk=32436.3636363636;logOddScore=112.06006137662;pval=0;pvalAdj=0;CTL_count=1129;CTL_fpk=20527.2727272727;CTL_logOddScore=0;eFDR=0
chr6	rtracklayer	sequence_feature	26157341	26157395	.	*	.	count=1711;fpk=31109.0909090909;logOddScore=100.304928142637;pval=0;pvalAdj=0;CTL_count=732;CTL_fpk=13309.0909090909;CTL_logOddScore=0;eFDR=0
chr6	rtracklayer	sequence_feature	26205246	26205300	.	*	.	count=2008;fpk=36509.0909090909;logOddScore=131.242126944084;pval=0;pvalAdj=0;CTL_count=682;CTL_fpk=12400;CTL_logOddScore=0;eFDR=0
chr6	rtracklayer	sequence_feature	27778301	27778355	.	*	.	count=1704;fpk=30981.8181818182;logOddScore=99.0268373002654;pval=0;pvalAdj=0;CTL_count=815;CTL_fpk=14818.1818181818;CTL_logOddScore=0;eFDR=0
chr6	rtracklayer	sequence_feature	27792216	27792270	.	*	.	count=1986;fpk=36109.0909090909;logOddScore=130.428302493363;pval=0;pvalAdj=0;CTL_count=1149;CTL_fpk=20890.9090909091;CTL_logOddScore=0;eFDR=0
chr6	rtracklayer	sequence_feature	27798926	27798980	.	*	.	count=1706;fpk=31018.1818181818;logOddScore=99.3947439786243;pval=0;pvalAdj=0;CTL_count=826;CTL_fpk=15018.1818181818;CTL_logOddScore=0;eFDR=0
chr8	rtracklayer	sequence_feature	56754996	56755090	.	*	.	count=8063;fpk=84873.6842105263;logOddScore=403.463681699416;pval=0;pvalAdj=0;CTL_count=7745;CTL_fpk=81526.3157894737;CTL_logOddScore=200.020401443685;eFDR=0
chr8	rtracklayer	sequence_feature	70602291	70602480	.	*	.	count=44079;fpk=231994.736842105;logOddScore=378.938457755841;pval=0;pvalAdj=0;CTL_count=51061;CTL_fpk=268742.105263158;CTL_logOddScore=-89.3161324619061;eFDR=0
chr10	rtracklayer	sequence_feature	103124601	103124650	.	*	.	count=146188;fpk=2923760;logOddScore=0.460441852255293;pval=0.483503298005228;pvalAdj=0.483503298005228;CTL_count=46014;CTL_fpk=920280;CTL_logOddScore=-29.1989710786286;eFDR=0.483503298005228
chr11	rtracklayer	sequence_feature	62609101	62609200	.	*	.	count=19340;fpk=193400;logOddScore=136.064585934442;pval=0;pvalAdj=0;CTL_count=4219;CTL_fpk=42190;CTL_logOddScore=0;eFDR=0
chr11	rtracklayer	sequence_feature	85195051	85195250	.	*	.	count=51679;fpk=258395;logOddScore=107.017183892542;pval=0;pvalAdj=0;CTL_count=55703;CTL_fpk=278515;CTL_logOddScore=0;eFDR=0
chr12	rtracklayer	sequence_feature	20704401	20704450	.	*	.	count=8588;fpk=171760;logOddScore=782.749819675072;pval=0;pvalAdj=0;CTL_count=5686;CTL_fpk=113720;CTL_logOddScore=-664.869504237031;eFDR=0.5
chr12	rtracklayer	sequence_feature	120729551	120729600	.	*	.	count=8574;fpk=171480;logOddScore=799.079321758695;pval=0;pvalAdj=0;CTL_count=3543;CTL_fpk=70860;CTL_logOddScore=-681.3992959471;eFDR=0.5
chr13	rtracklayer	sequence_feature	46948581	46948720	.	*	.	count=1975;fpk=14107.1428571429;logOddScore=412.059075432242;pval=0;pvalAdj=0;CTL_count=508;CTL_fpk=3628.57142857143;CTL_logOddScore=-72.5924256015537;eFDR=0
chr13	rtracklayer	sequence_feature	110076471	110076610	.	*	.	count=2060;fpk=14714.2857142857;logOddScore=90.291710853058;pval=0;pvalAdj=0;CTL_count=2101;CTL_fpk=15007.1428571429;CTL_logOddScore=304.296800287252;eFDR=0
chr15	rtracklayer	sequence_feature	26327351	26327400	.	*	.	count=299;fpk=5980;logOddScore=27.6177825479768;pval=0;pvalAdj=0;CTL_count=247;CTL_fpk=4940;CTL_logOddScore=73.0764536360955;eFDR=0
chr15	rtracklayer	sequence_feature	65588451	65588550	.	*	.	count=1117;fpk=11170;logOddScore=85.9053687721696;pval=0;pvalAdj=0;CTL_count=989;CTL_fpk=9890;CTL_logOddScore=131.346053073901;eFDR=0
chr15	rtracklayer	sequence_feature	65597051	65597150	.	*	.	count=1354;fpk=13540;logOddScore=108.246932810845;pval=0;pvalAdj=0;CTL_count=975;CTL_fpk=9750;CTL_logOddScore=108.495624934246;eFDR=0
chr15	rtracklayer	sequence_feature	66161351	66161400	.	*	.	count=831;fpk=16620;logOddScore=157.55169055355;pval=0;pvalAdj=0;CTL_count=382;CTL_fpk=7640;CTL_logOddScore=125.195246578914;eFDR=0
chr15	rtracklayer	sequence_feature	66795101	66795150	.	*	.	count=311;fpk=6220;logOddScore=81.9633375637273;pval=0;pvalAdj=0;CTL_count=173;CTL_fpk=3460;CTL_logOddScore=26.7885941468312;eFDR=0
chr15	rtracklayer	sequence_feature	96289101	96289150	.	*	.	count=256;fpk=5120;logOddScore=164.254599245249;pval=0;pvalAdj=0;CTL_count=60;CTL_fpk=1200;CTL_logOddScore=-95.1837130284689;eFDR=0
chr15	rtracklayer	sequence_feature	96289201	96289250	.	*	.	count=541;fpk=10820;logOddScore=179.735981673249;pval=0;pvalAdj=0;CTL_count=189;CTL_fpk=3780;CTL_logOddScore=38.3026869378107;eFDR=0
chr15	rtracklayer	sequence_feature	96327901	96327950	.	*	.	count=213;fpk=4260;logOddScore=80.6504374454632;pval=0;pvalAdj=0;CTL_count=94;CTL_fpk=1880;CTL_logOddScore=-48.2630381748149;eFDR=0
chr16	rtracklayer	sequence_feature	33963301	33963350	.	*	.	count=15584;fpk=311680;logOddScore=180.800944169504;pval=0;pvalAdj=0;CTL_count=18079;CTL_fpk=361580;CTL_logOddScore=-72.0352140163125;eFDR=0.666666666666667
chr16	rtracklayer	sequence_feature	33963401	33963450	.	*	.	count=16634;fpk=332680;logOddScore=532.471983476907;pval=0;pvalAdj=0;CTL_count=15809;CTL_fpk=316180;CTL_logOddScore=-421.118607562046;eFDR=0.666666666666667
chr16	rtracklayer	sequence_feature	33963651	33963700	.	*	.	count=15801;fpk=316020;logOddScore=295.100539410968;pval=0;pvalAdj=0;CTL_count=17199;CTL_fpk=343980;CTL_logOddScore=-181.229489646427;eFDR=0.666666666666667
chr19	rtracklayer	sequence_feature	24183576	24183640	.	*	.	count=2041;fpk=31400;logOddScore=345.801965074793;pval=0;pvalAdj=0;CTL_count=2822;CTL_fpk=43415.3846153846;CTL_logOddScore=0;eFDR=0
chr19	rtracklayer	sequence_feature	24184031	24184095	.	*	.	count=2776;fpk=42707.6923076923;logOddScore=426.549231369577;pval=0;pvalAdj=0;CTL_count=4080;CTL_fpk=62769.2307692308;CTL_logOddScore=0;eFDR=0
chr19	rtracklayer	sequence_feature	24184486	24184615	.	*	.	count=4784;fpk=36800;logOddScore=361.489047449898;pval=0;pvalAdj=0;CTL_count=5261;CTL_fpk=40469.2307692308;CTL_logOddScore=0;eFDR=0
chr19	rtracklayer	sequence_feature	24184746	24184810	.	*	.	count=2654;fpk=40830.7692307692;logOddScore=427.573789229251;pval=0;pvalAdj=0;CTL_count=2528;CTL_fpk=38892.3076923077;CTL_logOddScore=0;eFDR=0
chr19	rtracklayer	sequence_feature	24184876	24185005	.	*	.	count=3076;fpk=23661.5384615385;logOddScore=145.194564280158;pval=0;pvalAdj=0;CTL_count=3454;CTL_fpk=26569.2307692308;CTL_logOddScore=0;eFDR=0
chr19	rtracklayer	sequence_feature	24187151	24187215	.	*	.	count=2043;fpk=31430.7692307692;logOddScore=346.331181400368;pval=0;pvalAdj=0;CTL_count=2092;CTL_fpk=32184.6153846154;CTL_logOddScore=0;eFDR=0
chr19	rtracklayer	sequence_feature	24187281	24187345	.	*	.	count=1859;fpk=28600;logOddScore=289.481281826512;pval=0;pvalAdj=0;CTL_count=1963;CTL_fpk=30200;CTL_logOddScore=0;eFDR=0
chr19	rtracklayer	sequence_feature	36066551	36066615	.	*	.	count=3150;fpk=48461.5384615385;logOddScore=392.545271653818;pval=0;pvalAdj=0;CTL_count=3440;CTL_fpk=52923.0769230769;CTL_logOddScore=0;eFDR=0
chr20	rtracklayer	sequence_feature	2635851	2635900	.	*	.	count=46;fpk=920;logOddScore=33.1677250814675;pval=4.32183013245927e-156;pvalAdj=5.18619615895113e-155;CTL_count=12;CTL_fpk=240;CTL_logOddScore=-25.3749588150414;eFDR=4.32183013245927e-156
chr20	rtracklayer	sequence_feature	9337701	9337750	.	*	.	count=82;fpk=1640;logOddScore=5.88390886494905;pval=1.43244130364972e-15;pvalAdj=1.43244130364972e-15;CTL_count=66;CTL_fpk=1320;CTL_logOddScore=14.7502140077403;eFDR=0.0833333333333333
chr20	rtracklayer	sequence_feature	16651251	16651300	.	*	.	count=50;fpk=1000;logOddScore=25.089230367019;pval=1.01342067163397e-98;pvalAdj=3.04026201490192e-98;CTL_count=19;CTL_fpk=380;CTL_logOddScore=-14.9455520783618;eFDR=1.01342067163397e-98
chr20	rtracklayer	sequence_feature	17943401	17943500	.	*	.	count=81;fpk=810;logOddScore=8.33854996229241;pval=4.92222577917449e-22;pvalAdj=5.90667093500939e-22;CTL_count=64;CTL_fpk=640;CTL_logOddScore=-3.35735048830903;eFDR=0.1
chr20	rtracklayer	sequence_feature	26189001	26189050	.	*	.	count=44;fpk=880;logOddScore=18.9691725383091;pval=4.25390421764254e-64;pvalAdj=6.38085632646381e-64;CTL_count=21;CTL_fpk=420;CTL_logOddScore=-12.4640699558382;eFDR=0.125
chr20	rtracklayer	sequence_feature	26189901	26190000	.	*	.	count=106;fpk=1060;logOddScore=11.4944380968011;pval=3.93382418356484e-32;pvalAdj=5.24509891141978e-32;CTL_count=75;CTL_fpk=750;CTL_logOddScore=-0.500751356597519;eFDR=0.111111111111111
chr20	rtracklayer	sequence_feature	26190451	26190500	.	*	.	count=91;fpk=1820;logOddScore=20.0594323396216;pval=1.04300277160881e-69;pvalAdj=2.08600554321762e-69;CTL_count=36;CTL_fpk=720;CTL_logOddScore=1.49426482131071;eFDR=0.166666666666667
chr20	rtracklayer	sequence_feature	37053801	37053850	.	*	.	count=52;fpk=1040;logOddScore=27.4726699011318;pval=2.8896795903279e-114;pvalAdj=1.15587183613116e-113;CTL_count=18;CTL_fpk=360;CTL_logOddScore=-16.2587843193056;eFDR=2.8896795903279e-114
chr20	rtracklayer	sequence_feature	37062501	37062550	.	*	.	count=65;fpk=1300;logOddScore=31.6244326499219;pval=4.18741482618146e-144;pvalAdj=2.51244889570887e-143;CTL_count=19;CTL_fpk=380;CTL_logOddScore=-14.9455520783618;eFDR=4.18741482618146e-144
chr20	rtracklayer	sequence_feature	47896901	47896950	.	*	.	count=99;fpk=1980;logOddScore=6.6105707853305;pval=2.3384568850837e-17;pvalAdj=2.55104387463677e-17;CTL_count=68;CTL_fpk=1360;CTL_logOddScore=15.1839098051516;eFDR=0.0909090909090909
chr20	rtracklayer	sequence_feature	47897301	47897350	.	*	.	count=58;fpk=1160;logOddScore=19.1007223087083;pval=9.21814643865413e-65;pvalAdj=1.58025367519785e-64;CTL_count=28;CTL_fpk=560;CTL_logOddScore=-5.06097904822429;eFDR=0.142857142857143
chr20	rtracklayer	sequence_feature	60963501	60963550	.	*	.	count=62;fpk=1240;logOddScore=23.6416522720908;pval=7.63606227926314e-90;pvalAdj=1.83265494702315e-89;CTL_count=25;CTL_fpk=500;CTL_logOddScore=-8.01275437653707;eFDR=7.63606227926314e-90
chr21	rtracklayer	sequence_feature	9827091	9827220	.	*	.	count=56214;fpk=432415.384615385;logOddScore=278.833804982704;pval=0;pvalAdj=0;CTL_count=45121;CTL_fpk=347084.615384615;CTL_logOddScore=-133.491311435452;eFDR=0
chr21	rtracklayer	sequence_feature	9827351	9827415	.	*	.	count=25488;fpk=392123.076923077;logOddScore=32.3787590460332;pval=1.06425177541684e-197;pvalAdj=1.06425177541684e-197;CTL_count=24061;CTL_fpk=370169.230769231;CTL_logOddScore=34.0523006428357;eFDR=1.06425177541684e-197
chr21	rtracklayer	sequence_feature	15457261	15457325	.	*	.	count=28916;fpk=444861.538461538;logOddScore=219.879976948991;pval=0;pvalAdj=0;CTL_count=27568;CTL_fpk=424123.076923077;CTL_logOddScore=-93.3328324152881;eFDR=0
chrX	rtracklayer	sequence_feature	108297361	108297440	.	*	.	count=5611;fpk=70137.5;logOddScore=247.314439930732;pval=0;pvalAdj=0;CTL_count=7527;CTL_fpk=94087.5;CTL_logOddScore=-14.478650490604;eFDR=0.5
chrX	rtracklayer	sequence_feature	108297761	108297840	.	*	.	count=7797;fpk=97462.5;logOddScore=370.146659187282;pval=0;pvalAdj=0;CTL_count=7616;CTL_fpk=95200;CTL_logOddScore=-14.4786504906029;eFDR=0.5
chrY	rtracklayer	sequence_feature	10037901	10037950	.	*	.	count=4642030;fpk=92840600;logOddScore=720.945515470395;pval=0;pvalAdj=0;CTL_count=4754224;CTL_fpk=95084480;CTL_logOddScore=-35.4777327620636;eFDR=0