##gff-version 3
##source-version rtracklayer 1.34.1
##date 2017-05-08
##genome-build .	hg19
chrM	rtracklayer	sequence_feature	1	1657	.	+	.	count=159;fpk=95.956547978274;logOddScore=226.713194640463;pval=0.699411858144932;pvalAdj=0.896660076402038;CTL_count=1619;CTL_fpk=977.066988533494;CTL_logOddScore=-224.555630624169;eFDR=0.699411858144932
chrM	rtracklayer	sequence_feature	9943	11599	.	+	.	count=129;fpk=77.8515389257695;logOddScore=48.7240883512237;pval=0.896660076402038;pvalAdj=0.896660076402038;CTL_count=2377;CTL_fpk=1434.52021726011;CTL_logOddScore=-47.4197483538624;eFDR=0.896660076402038
chr1	rtracklayer	sequence_feature	91850001	91860000	.	+	.	count=103441;fpk=10344.1;logOddScore=1053.49229529778;pval=0;pvalAdj=0;CTL_count=146657;CTL_fpk=14665.7;CTL_logOddScore=-359.185766051801;eFDR=0.5
chr1	rtracklayer	sequence_feature	108110001	108120000	.	+	.	count=105810;fpk=10581;logOddScore=1246.36500708461;pval=0;pvalAdj=0;CTL_count=71562;CTL_fpk=7156.2;CTL_logOddScore=-536.008782133737;eFDR=0.5
chr2	rtracklayer	sequence_feature	133030001	133040000	.	+	.	count=55576;fpk=5557.6;logOddScore=11.86335513636;pval=4.02742646787856e-07;pvalAdj=4.02742646787856e-07;CTL_count=133779;CTL_fpk=13377.9;CTL_logOddScore=206.699322066256;eFDR=4.02742646787856e-07
chr8	rtracklayer	sequence_feature	70600001	70610000	.	+	.	count=13897;fpk=1389.7;logOddScore=554.964932602457;pval=0;pvalAdj=0;CTL_count=53633;CTL_fpk=5363.3;CTL_logOddScore=-437.286380482922;eFDR=0
chr9	rtracklayer	sequence_feature	95010001	95020000	.	+	.	count=1073;fpk=107.3;logOddScore=716.600001660476;pval=1.6222570968285e-60;pvalAdj=1.6222570968285e-60;CTL_count=12;CTL_fpk=1.2;CTL_logOddScore=-711.764531661928;eFDR=0.5
chr13	rtracklayer	sequence_feature	21430001	21440000	.	+	.	count=467;fpk=46.7;logOddScore=712.230252423128;pval=4.18884735359266e-13;pvalAdj=5.58512980479022e-13;CTL_count=5;CTL_fpk=0.5;CTL_logOddScore=-712.47973164213;eFDR=0.333333333333333
chr13	rtracklayer	sequence_feature	39600001	39610000	.	+	.	count=472;fpk=47.2;logOddScore=712.362171543979;pval=4.11722465200089e-13;pvalAdj=5.58512980479022e-13;CTL_count=4;CTL_fpk=0.4;CTL_logOddScore=-712.795573655196;eFDR=0.5
chr13	rtracklayer	sequence_feature	52990001	53000000	.	+	.	count=448;fpk=44.8;logOddScore=710.001654060538;pval=5.60101580518558e-13;pvalAdj=5.60101580518558e-13;CTL_count=16;CTL_fpk=1.6;CTL_logOddScore=-710.231094977407;eFDR=0.25
chr15	rtracklayer	sequence_feature	23000001	23060000	.	+	.	count=594;fpk=9.9;logOddScore=207.331769508472;pval=0.00320318426705527;pvalAdj=0.00380378131712813;CTL_count=39;CTL_fpk=0.65;CTL_logOddScore=-204.697431759553;eFDR=0.09375
chr15	rtracklayer	sequence_feature	28360001	28420000	.	+	.	count=478;fpk=7.96666666666667;logOddScore=220.981413123255;pval=0.000323324657926672;pvalAdj=0.000722725705953737;CTL_count=22;CTL_fpk=0.366666666666667;CTL_logOddScore=-216.206009150568;eFDR=0.176470588235294
chr15	rtracklayer	sequence_feature	30010001	30070000	.	+	.	count=506;fpk=8.43333333333333;logOddScore=226.459982286672;pval=0.000113811595973243;pvalAdj=0.00035978160372981;CTL_count=17;CTL_fpk=0.283333333333333;CTL_logOddScore=-220.973919283184;eFDR=0.333333333333333
chr15	rtracklayer	sequence_feature	31240001	31270000	.	+	.	count=262;fpk=8.73333333333333;logOddScore=218.567002583245;pval=0.000500790487507566;pvalAdj=0.000951501926264376;CTL_count=12;CTL_fpk=0.4;CTL_logOddScore=-213.749272130802;eFDR=0.15
chr15	rtracklayer	sequence_feature	35170001	35200000	.	+	.	count=217;fpk=7.23333333333333;logOddScore=226.428516620239;pval=0.000114519509716758;pvalAdj=0.00035978160372981;CTL_count=4;CTL_fpk=0.133333333333333;CTL_logOddScore=-226.485853649274;eFDR=0.3
chr15	rtracklayer	sequence_feature	35210001	35260000	.	+	.	count=494;fpk=9.88;logOddScore=213.094827874846;pval=0.00128298312337331;pvalAdj=0.0019507912633847;CTL_count=25;CTL_fpk=0.5;CTL_logOddScore=-210.459281668792;eFDR=0.125
chr15	rtracklayer	sequence_feature	41270001	41310000	.	+	.	count=364;fpk=9.1;logOddScore=212.673103113879;pval=0.00137543552794313;pvalAdj=0.0019507912633847;CTL_count=26;CTL_fpk=0.65;CTL_logOddScore=-206.436414212915;eFDR=0.115384615384615
chr15	rtracklayer	sequence_feature	41340001	41360000	.	+	.	count=205;fpk=10.25;logOddScore=216.869488444283;pval=0.000675571376208461;pvalAdj=0.00116689601345098;CTL_count=8;CTL_fpk=0.4;CTL_logOddScore=-214.804207414525;eFDR=0.136363636363636
chr15	rtracklayer	sequence_feature	43760001	43780000	.	+	.	count=192;fpk=9.6;logOddScore=219.39640593636;pval=0.00043157498194819;pvalAdj=0.000863149963896379;CTL_count=7;CTL_fpk=0.35;CTL_logOddScore=-218.745652742954;eFDR=0.157894736842105
chr15	rtracklayer	sequence_feature	43960001	43980000	.	+	.	count=179;fpk=8.95;logOddScore=209.82059981411;pval=0.00217821296575124;pvalAdj=0.00267006750640474;CTL_count=13;CTL_fpk=0.65;CTL_logOddScore=-207.216680071261;eFDR=0.0967741935483871
chr15	rtracklayer	sequence_feature	44340001	44490000	.	+	.	count=1224;fpk=8.16;logOddScore=212.896925649933;pval=0.001325636437659;pvalAdj=0.0019507912633847;CTL_count=96;CTL_fpk=0.64;CTL_logOddScore=-206.883039030257;eFDR=0.12
chr15	rtracklayer	sequence_feature	44900001	44930000	.	+	.	count=317;fpk=10.5666666666667;logOddScore=212.626186066103;pval=0.00138608852924702;pvalAdj=0.0019507912633847;CTL_count=16;CTL_fpk=0.533333333333333;CTL_logOddScore=-209.722225453755;eFDR=0.111111111111111
chr15	rtracklayer	sequence_feature	44940001	44960000	.	+	.	count=186;fpk=9.3;logOddScore=225.638915598406;pval=0.000133696844862997;pvalAdj=0.00035978160372981;CTL_count=3;CTL_fpk=0.15;CTL_logOddScore=-224.495103543988;eFDR=0.25
chr15	rtracklayer	sequence_feature	49080001	49100000	.	+	.	count=174;fpk=8.7;logOddScore=230.837140114052;pval=4.69415715090402e-05;pvalAdj=0.000254825673906218;CTL_count=2;CTL_fpk=0.1;CTL_logOddScore=-228.436548872417;eFDR=0.428571428571429
chr15	rtracklayer	sequence_feature	49310001	49330000	.	+	.	count=162;fpk=8.1;logOddScore=225.574044585226;pval=0.000135399423434899;pvalAdj=0.00035978160372981;CTL_count=4;CTL_fpk=0.2;CTL_logOddScore=-224.153399004027;eFDR=0.230769230769231
chr15	rtracklayer	sequence_feature	52480001	52520000	.	+	.	count=356;fpk=8.9;logOddScore=219.449965940008;pval=0.000427425424821868;pvalAdj=0.000863149963896379;CTL_count=17;CTL_fpk=0.425;CTL_logOddScore=-215.685039537644;eFDR=0.166666666666667
chr15	rtracklayer	sequence_feature	56200001	56220000	.	+	.	count=192;fpk=9.6;logOddScore=233.439473102104;pval=2.71293011303298e-05;pvalAdj=0.000254825673906218;CTL_count=1;CTL_fpk=0.05;CTL_logOddScore=-231.004678090304;eFDR=0.75
chr15	rtracklayer	sequence_feature	56970001	56990000	.	+	.	count=183;fpk=9.15;logOddScore=231.603318130044;pval=4.00113952531845e-05;pvalAdj=0.000254825673906218;CTL_count=1;CTL_fpk=0.05;CTL_logOddScore=-231.004678090304;eFDR=0.6
chr15	rtracklayer	sequence_feature	58900001	58940000	.	+	.	count=382;fpk=9.55;logOddScore=225.440238092956;pval=0.000138975644950716;pvalAdj=0.00035978160372981;CTL_count=10;CTL_fpk=0.25;CTL_logOddScore=-221.23053250017;eFDR=0.214285714285714
chr15	rtracklayer	sequence_feature	58980001	59000000	.	+	.	count=153;fpk=7.65;logOddScore=225.993772799138;pval=0.000124733105979995;pvalAdj=0.00035978160372981;CTL_count=3;CTL_fpk=0.15;CTL_logOddScore=-226.197164092974;eFDR=0.272727272727273
chr15	rtracklayer	sequence_feature	59210001	59230000	.	+	.	count=161;fpk=8.05;logOddScore=183.466397005258;pval=0.0631943503579498;pvalAdj=0.0649023057730296;CTL_count=28;CTL_fpk=1.4;CTL_logOddScore=-182.859326122705;eFDR=0.0810810810810811
chr15	rtracklayer	sequence_feature	60640001	60660000	.	+	.	count=175;fpk=8.75;logOddScore=190.026279603176;pval=0.0316045515643799;pvalAdj=0.0343135131270411;CTL_count=25;CTL_fpk=1.25;CTL_logOddScore=-189.182268653321;eFDR=0.0857142857142857
chr15	rtracklayer	sequence_feature	62210001	62290000	.	+	.	count=786;fpk=9.825;logOddScore=228.106635809523;pval=8.20023764395933e-05;pvalAdj=0.00035978160372981;CTL_count=19;CTL_fpk=0.2375;CTL_logOddScore=-222.172076465643;eFDR=0.375
chr15	rtracklayer	sequence_feature	63940001	64000000	.	+	.	count=513;fpk=8.55;logOddScore=231.357241804636;pval=4.21241766473416e-05;pvalAdj=0.000254825673906218;CTL_count=11;CTL_fpk=0.183333333333333;CTL_logOddScore=-224.488581030215;eFDR=0.5
chr15	rtracklayer	sequence_feature	64360001	64390000	.	+	.	count=278;fpk=9.26666666666667;logOddScore=204.244362707924;pval=0.00506622204078402;pvalAdj=0.00583383144090281;CTL_count=23;CTL_fpk=0.766666666666667;CTL_logOddScore=-202.543830940721;eFDR=0.0909090909090909
chr15	rtracklayer	sequence_feature	64490001	64510000	.	+	.	count=155;fpk=7.75;logOddScore=217.068500021461;pval=0.000652501286233933;pvalAdj=0.00116689601345098;CTL_count=6;CTL_fpk=0.3;CTL_logOddScore=-217.448204767214;eFDR=0.142857142857143
chr15	rtracklayer	sequence_feature	65400001	65420000	.	+	.	count=180;fpk=9;logOddScore=187.472984986709;pval=0.0418529961604431;pvalAdj=0.044178162613801;CTL_count=27;CTL_fpk=1.35;CTL_logOddScore=-185.482015097154;eFDR=0.0833333333333333
chr15	rtracklayer	sequence_feature	65730001	65790000	.	+	.	count=484;fpk=8.06666666666667;logOddScore=225.328884649348;pval=0.000142019054103872;pvalAdj=0.00035978160372981;CTL_count=19;CTL_fpk=0.316666666666667;CTL_logOddScore=-220.050414740818;eFDR=0.2
chr15	rtracklayer	sequence_feature	65870001	65910000	.	+	.	count=290;fpk=7.25;logOddScore=211.22476501191;pval=0.0017411943200461;pvalAdj=0.00236304943434828;CTL_count=23;CTL_fpk=0.575;CTL_logOddScore=-210.547264215284;eFDR=0.107142857142857
chr15	rtracklayer	sequence_feature	72500001	72520000	.	+	.	count=163;fpk=8.15;logOddScore=105.859892360119;pval=0.991016920139273;pvalAdj=0.991016920139273;CTL_count=141;CTL_fpk=7.05;CTL_logOddScore=-105.609489893621;eFDR=0.991016920139273
chr15	rtracklayer	sequence_feature	73050001	73070000	.	+	.	count=200;fpk=10;logOddScore=210.666310650465;pval=0.00190443074257317;pvalAdj=0.00241227894059268;CTL_count=10;CTL_fpk=0.5;CTL_logOddScore=-209.552099230752;eFDR=0.1
chr15	rtracklayer	sequence_feature	75680001	75700000	.	+	.	count=170;fpk=8.5;logOddScore=210.951054709906;pval=0.0018195384605086;pvalAdj=0.00238422281032162;CTL_count=11;CTL_fpk=0.55;CTL_logOddScore=-207.952928328248;eFDR=0.103448275862069
chr15	rtracklayer	sequence_feature	76500001	76580000	.	+	.	count=690;fpk=8.625;logOddScore=214.259090853181;pval=0.00105646345353655;pvalAdj=0.00174546135801692;CTL_count=53;CTL_fpk=0.6625;CTL_logOddScore=-207.557737502646;eFDR=0.130434782608696
chr15	rtracklayer	sequence_feature	77350001	77370000	.	+	.	count=189;fpk=9.45;logOddScore=224.677155513629;pval=0.000161120941782319;pvalAdj=0.000382662236733007;CTL_count=4;CTL_fpk=0.2;CTL_logOddScore=-224.153399004027;eFDR=0.1875
chr15	rtracklayer	sequence_feature	90410001	90450000	.	+	.	count=393;fpk=9.825;logOddScore=198.205570469812;pval=0.0116582255612458;pvalAdj=0.0130297815096277;CTL_count=42;CTL_fpk=1.05;CTL_logOddScore=-195.035944161633;eFDR=0.0882352941176471
chr18	rtracklayer	sequence_feature	9570001	9600000	.	+	.	count=328;fpk=10.9333333333333;logOddScore=12.2223661881846;pval=3.94070857371218e-06;pvalAdj=7.31845877975118e-06;CTL_count=5;CTL_fpk=0.166666666666667;CTL_logOddScore=-12.2165118065602;eFDR=3.94070857371218e-06
chr18	rtracklayer	sequence_feature	12810001	12830000	.	+	.	count=245;fpk=12.25;logOddScore=17.1289596735747;pval=1.54822904558055e-06;pvalAdj=4.13751531899916e-06;CTL_count=1;CTL_fpk=0.05;CTL_logOddScore=-15.3595581806222;eFDR=1.54822904558055e-06
chr18	rtracklayer	sequence_feature	29410001	29440000	.	+	.	count=396;fpk=13.2;logOddScore=13.5713454763644;pval=3.05930063567256e-06;pvalAdj=6.62848471062387e-06;CTL_count=6;CTL_fpk=0.2;CTL_logOddScore=-11.9632860775875;eFDR=3.05930063567256e-06
chr18	rtracklayer	sequence_feature	33630001	33650000	.	+	.	count=265;fpk=13.25;logOddScore=7.78349028372184;pval=8.88863145623166e-06;pvalAdj=1.05047462664556e-05;CTL_count=15;CTL_fpk=0.75;CTL_logOddScore=-6.93937423150497;eFDR=8.88863145623166e-06
chr18	rtracklayer	sequence_feature	36920001	36950000	.	+	.	count=376;fpk=12.5333333333333;logOddScore=9.24001702982654;pval=6.82908656243062e-06;pvalAdj=9.86423614573312e-06;CTL_count=10;CTL_fpk=0.333333333333333;CTL_logOddScore=-8.95882635613557;eFDR=6.82908656243062e-06
chr18	rtracklayer	sequence_feature	37030001	37050000	.	+	.	count=255;fpk=12.75;logOddScore=19.1904866500759;pval=1.03412400594096e-06;pvalAdj=4.13751531899916e-06;CTL_count=0;CTL_fpk=0;CTL_logOddScore=-18.1097919759029;eFDR=1.03412400594096e-06
chr18	rtracklayer	sequence_feature	37070001	37120000	.	+	.	count=642;fpk=12.84;logOddScore=11.2689967848633;pval=4.70490600482966e-06;pvalAdj=7.64547225784819e-06;CTL_count=18;CTL_fpk=0.36;CTL_logOddScore=-7.02051788608486;eFDR=4.70490600482966e-06
chr18	rtracklayer	sequence_feature	37230001	37350000	.	+	.	count=1730;fpk=14.4166666666667;logOddScore=16.9873964167842;pval=1.59135204576891e-06;pvalAdj=4.13751531899916e-06;CTL_count=37;CTL_fpk=0.308333333333333;CTL_logOddScore=-8.63487508059631;eFDR=1.59135204576891e-06
chr18	rtracklayer	sequence_feature	45410001	45430000	.	+	.	count=269;fpk=13.45;logOddScore=8.25237726211581;pval=8.16841026004256e-06;pvalAdj=1.05047462664556e-05;CTL_count=7;CTL_fpk=0.35;CTL_logOddScore=-7.46641757564131;eFDR=8.16841026004256e-06
chr18	rtracklayer	sequence_feature	67790001	67820000	.	+	.	count=378;fpk=12.6;logOddScore=20.5647351473304;pval=7.87341369060311e-07;pvalAdj=4.13751531899916e-06;CTL_count=0;CTL_fpk=0;CTL_logOddScore=-18.1098324978969;eFDR=7.87341369060311e-07
chr18	rtracklayer	sequence_feature	67830001	67870000	.	+	.	count=551;fpk=13.775;logOddScore=25.0047835633756;pval=3.19862597447212e-07;pvalAdj=4.13751531899916e-06;CTL_count=0;CTL_fpk=0;CTL_logOddScore=-18.0520829181052;eFDR=3.19862597447212e-07
chr20	rtracklayer	sequence_feature	34290001	34300000	.	+	.	count=745;fpk=74.5;logOddScore=210.303676055443;pval=4.39186182577651e-23;pvalAdj=8.78372365155302e-23;CTL_count=24;CTL_fpk=2.4;CTL_logOddScore=-205.08374152451;eFDR=4.39186182577651e-23
chr20	rtracklayer	sequence_feature	34630001	34640000	.	+	.	count=813;fpk=81.3;logOddScore=198.117862731188;pval=3.86724023332718e-22;pvalAdj=3.86724023332718e-22;CTL_count=30;CTL_fpk=3;CTL_logOddScore=-191.954230857957;eFDR=3.86724023332718e-22
chr22	rtracklayer	sequence_feature	16120001	16130000	.	+	.	count=670;fpk=67;logOddScore=709.156563885825;pval=1.06012109336425e-20;pvalAdj=1.59018164004637e-20;CTL_count=8;CTL_fpk=0.8;CTL_logOddScore=-708.396418532264;eFDR=1.06012109336425e-20
chr22	rtracklayer	sequence_feature	16190001	16200000	.	+	.	count=684;fpk=68.4;logOddScore=713.508180620261;pval=5.23983901177106e-21;pvalAdj=1.57195170353132e-20;CTL_count=4;CTL_fpk=0.4;CTL_logOddScore=-712.680671700087;eFDR=5.23983901177106e-21
chr22	rtracklayer	sequence_feature	42960001	42970000	.	+	.	count=655;fpk=65.5;logOddScore=548.236305934942;pval=4.47871539949249e-11;pvalAdj=4.47871539949249e-11;CTL_count=77;CTL_fpk=7.7;CTL_logOddScore=-547.774143100572;eFDR=4.47871539949249e-11
chrX	rtracklayer	sequence_feature	122730001	122780000	.	+	.	count=888;fpk=17.76;logOddScore=63.519888636691;pval=2.51939200830086e-12;pvalAdj=2.51939200830086e-12;CTL_count=26;CTL_fpk=0.52;CTL_logOddScore=-68.7754544135324;eFDR=2.51939200830086e-12
chrY	rtracklayer	sequence_feature	550001	570000	.	+	.	count=95;fpk=4.75;logOddScore=3.96117092654356;pval=5.99670310952728e-31;pvalAdj=2.69851639928728e-30;CTL_count=6;CTL_fpk=0.3;CTL_logOddScore=6.7097279960903;eFDR=5.99670310952728e-31
chrY	rtracklayer	sequence_feature	1370001	1380000	.	+	.	count=52;fpk=5.2;logOddScore=8.39332416974075;pval=1.02562550311434e-36;pvalAdj=9.23062952802903e-36;CTL_count=0;CTL_fpk=0;CTL_logOddScore=-0.209351020028837;eFDR=1.02562550311434e-36
chrY	rtracklayer	sequence_feature	13310001	13370000	.	+	.	count=295;fpk=4.91666666666667;logOddScore=1.66302945450224;pval=3.67230833854289e-28;pvalAdj=1.10169250156287e-27;CTL_count=34;CTL_fpk=0.566666666666667;CTL_logOddScore=14.4953470252744;eFDR=3.67230833854289e-28