Sat May 13 02:17:58 2017: program started at: 
Sat May 13 02:17:58 2017: The command used is:
Sat May 13 02:17:58 2017: /mnt/fix/c/solid.data_results.recovered.data/tools/rnaseq/rip/ASPeak/scripts/findPeaks.pl -b ASPeak_bcatPoly_vs_Input/exons/inputBG/PHR20r-bcatPoly/all/chrY.bg -o ASPeak_bcatPoly_vs_Input/exons/foundPeaks/PHR20r-bcatPoly/all -rpkm ASPeak_bcatPoly_vs_Input/exons/rpkm/RPKMall.csv -l ASPeak_bcatPoly_vs_Input/exons/inputBG/PHR20r-bcatPoly/allNBparams/NBall.csv -r /data/results/reference/hg19/regions/exons.bed -c chrY -gap 6 -p 0.01

Sat May 13 02:17:58 2017: Parameters specified:
Sat May 13 02:17:58 2017: BGfile: ASPeak_bcatPoly_vs_Input/exons/inputBG/PHR20r-bcatPoly/all/chrY.bg
Sat May 13 02:17:58 2017: outdir: ASPeak_bcatPoly_vs_Input/exons/foundPeaks/PHR20r-bcatPoly/all
Sat May 13 02:17:58 2017: chrom: chrY
Sat May 13 02:17:58 2017: refFile: /data/results/reference/hg19/regions/exons.bed
Sat May 13 02:17:58 2017: lambdafile: ASPeak_bcatPoly_vs_Input/exons/inputBG/PHR20r-bcatPoly/allNBparams/NBall.csv
Sat May 13 02:17:58 2017: frameRadii: 
Sat May 13 02:17:58 2017: noRNASeq: 
Sat May 13 02:17:58 2017: Gaps Tolerated (gapNumber): 6
Sat May 13 02:17:58 2017: getIntervals: chrY
Sat May 13 02:17:59 2017: getGenes:4758 DONE

Sat May 13 02:17:59 2017: System is working WITH RNASeq data.
Sat May 13 02:17:59 2017: getRPKM: chrY
Sat May 13 02:18:00 2017: getRPKM:599361 DONE

Sat May 13 02:18:00 2017: get Negative Binomial Parameters: chrY
Sat May 13 02:18:03 2017: get Negative Binomial Parameters: 461888 DONE

Sat May 13 02:18:03 2017: getBGVals: ASPeak_bcatPoly_vs_Input/exons/inputBG/PHR20r-bcatPoly/all/chrY.bg
Sat May 13 02:18:03 2017: getBGVals: 131 DONE

Sat May 13 02:18:03 2017: There were 1379 intervals without RNASeq data. Their NB parameters were determined locally from the interval.

Sat May 13 02:18:03 2017: findPeaks.pl done.