Sat May 13 02:29:48 2017: program started at: 
Sat May 13 02:29:48 2017: The command used is:
Sat May 13 02:29:48 2017: /mnt/fix/c/solid.data_results.recovered.data/tools/rnaseq/rip/ASPeak/scripts/findPeaks.pl -b ASPeak_bcatPoly_vs_Input/5utr/inputBG/PHR19r-Input/all/chr22.bg -o ASPeak_bcatPoly_vs_Input/5utr/foundPeaks/PHR19r-Input/all -rpkm ASPeak_bcatPoly_vs_Input/5utr/rpkm/RPKMall.csv -l ASPeak_bcatPoly_vs_Input/5utr/inputBG/PHR19r-Input/allNBparams/NBall.csv -r /data/results/reference/hg19/regions/5utr.bed -c chr22 -gap 6 -p 0.01

Sat May 13 02:29:48 2017: Parameters specified:
Sat May 13 02:29:48 2017: BGfile: ASPeak_bcatPoly_vs_Input/5utr/inputBG/PHR19r-Input/all/chr22.bg
Sat May 13 02:29:48 2017: outdir: ASPeak_bcatPoly_vs_Input/5utr/foundPeaks/PHR19r-Input/all
Sat May 13 02:29:48 2017: chrom: chr22
Sat May 13 02:29:48 2017: refFile: /data/results/reference/hg19/regions/5utr.bed
Sat May 13 02:29:48 2017: lambdafile: ASPeak_bcatPoly_vs_Input/5utr/inputBG/PHR19r-Input/allNBparams/NBall.csv
Sat May 13 02:29:48 2017: frameRadii: 
Sat May 13 02:29:48 2017: noRNASeq: 
Sat May 13 02:29:48 2017: Gaps Tolerated (gapNumber): 6
Sat May 13 02:29:48 2017: getIntervals: chr22
Sat May 13 02:29:48 2017: getGenes:2900 DONE

Sat May 13 02:29:48 2017: System is working WITH RNASeq data.
Sat May 13 02:29:48 2017: getRPKM: chr22
Sat May 13 02:29:48 2017: getRPKM:125439 DONE

Sat May 13 02:29:48 2017: get Negative Binomial Parameters: chr22
Sat May 13 02:29:49 2017: get Negative Binomial Parameters: 84712 DONE

Sat May 13 02:29:49 2017: getBGVals: ASPeak_bcatPoly_vs_Input/5utr/inputBG/PHR19r-Input/all/chr22.bg
Sat May 13 02:29:49 2017: getBGVals: 2156 DONE

Sat May 13 02:29:49 2017: There were 2137 intervals without RNASeq data. Their NB parameters were determined locally from the interval.

Sat May 13 02:29:49 2017: findPeaks.pl done.