Mon May 15 17:42:30 2017: program started at: 
Mon May 15 17:42:30 2017: The command used is:
Mon May 15 17:42:30 2017: /mnt/fix/c/solid.data_results.recovered.data/tools/rnaseq/rip/ASPeak/scripts/findPeaks.pl -b ASPeak_bcatMono_vs_Input/5utr/inputBG/PHR19r-Input/all/chr15.bg -o ASPeak_bcatMono_vs_Input/5utr/foundPeaks/PHR19r-Input/all -rpkm ASPeak_bcatMono_vs_Input/5utr/rpkm/RPKMall.csv -l ASPeak_bcatMono_vs_Input/5utr/inputBG/PHR19r-Input/allNBparams/NBall.csv -r /data/results/reference/hg19/regions/5utr.bed -c chr15 -gap 6 -p 0.01

Mon May 15 17:42:30 2017: Parameters specified:
Mon May 15 17:42:30 2017: BGfile: ASPeak_bcatMono_vs_Input/5utr/inputBG/PHR19r-Input/all/chr15.bg
Mon May 15 17:42:30 2017: outdir: ASPeak_bcatMono_vs_Input/5utr/foundPeaks/PHR19r-Input/all
Mon May 15 17:42:30 2017: chrom: chr15
Mon May 15 17:42:30 2017: refFile: /data/results/reference/hg19/regions/5utr.bed
Mon May 15 17:42:30 2017: lambdafile: ASPeak_bcatMono_vs_Input/5utr/inputBG/PHR19r-Input/allNBparams/NBall.csv
Mon May 15 17:42:30 2017: frameRadii: 
Mon May 15 17:42:30 2017: noRNASeq: 
Mon May 15 17:42:30 2017: Gaps Tolerated (gapNumber): 6
Mon May 15 17:42:30 2017: getIntervals: chr15
Mon May 15 17:42:30 2017: getGenes:4693 DONE

Mon May 15 17:42:30 2017: System is working WITH RNASeq data.
Mon May 15 17:42:30 2017: getRPKM: chr15
Mon May 15 17:42:30 2017: getRPKM:125439 DONE

Mon May 15 17:42:30 2017: get Negative Binomial Parameters: chr15
Mon May 15 17:42:31 2017: get Negative Binomial Parameters: 84712 DONE

Mon May 15 17:42:31 2017: getBGVals: ASPeak_bcatMono_vs_Input/5utr/inputBG/PHR19r-Input/all/chr15.bg
Mon May 15 17:42:31 2017: getBGVals: 1667 DONE

Mon May 15 17:42:31 2017: There were 2992 intervals without RNASeq data. Their NB parameters were determined locally from the interval.

Mon May 15 17:42:31 2017: findPeaks.pl done.