##gff-version 3 ##source-version rtracklayer 1.34.1 ##date 2017-05-08 ##genome-build . hg19 chr1 rtracklayer sequence_feature 28835236 28835400 . * . ensembl_gene_id=ENSG00000116329;external_gene_name=OPRD1;description=opioid receptor delta 1 [Source:HGNC Symbol%3bAcc:HGNC:8153];count=1706;fpk=10339.3939393939;logOddScore=701.108024491759;pval=0;pvalAdj=0;CTL_count=592;CTL_fpk=3587.87878787879;CTL_logOddScore=-701.396920166742;eFDR=0.4;peak=01;feature=ENSG00000116329;start_position=28812142;end_position=28871267;feature_strand=+;insideFeature=inside;distancetoFeature=23094;shortestDistance=23094;fromOverlappingOrNearest=NearestLocation chr1 rtracklayer sequence_feature 108113446 108113610 . * . ensembl_gene_id=ENSG00000226822;external_gene_name=RP11-356N1.2;description=;count=1404;fpk=8509.09090909091;logOddScore=672.157903482407;pval=0;pvalAdj=0;CTL_count=2345;CTL_fpk=14212.1212121212;CTL_logOddScore=-675.784350688763;eFDR=0.4;peak=02;feature=ENSG00000226822;start_position=108040263;end_position=108076020;feature_strand=+;insideFeature=downstream;distancetoFeature=73183;shortestDistance=37426;fromOverlappingOrNearest=NearestLocation chr1 rtracklayer sequence_feature 149224021 149224185 . * . ensembl_gene_id=ENSG00000274265;external_gene_name=CH17-189H20.1;description=;count=1462;fpk=8860.60606060606;logOddScore=704.455824370663;pval=0;pvalAdj=0;CTL_count=497;CTL_fpk=3012.12121212121;CTL_logOddScore=-702.884999669265;eFDR=0.4;peak=03;feature=ENSG00000274265;start_position=149176022;end_position=149251013;feature_strand=+;insideFeature=inside;distancetoFeature=47999;shortestDistance=26828;fromOverlappingOrNearest=Overlapping chr1 rtracklayer sequence_feature 149224021 149224185 . * . ensembl_gene_id=ENSG00000215861;external_gene_name=WI2-1896O14.1;description=;count=1462;fpk=8860.60606060606;logOddScore=704.455824370663;pval=0;pvalAdj=0;CTL_count=497;CTL_fpk=3012.12121212121;CTL_logOddScore=-702.884999669265;eFDR=0.4;peak=03;feature=ENSG00000215861;start_position=149197992;end_position=149321732;feature_strand=-;insideFeature=inside;distancetoFeature=97711;shortestDistance=26029;fromOverlappingOrNearest=Overlapping chr1 rtracklayer sequence_feature 149224021 149224185 . * . ensembl_gene_id=ENSG00000272755;external_gene_name=RP11-326G21.1;description=;count=1462;fpk=8860.60606060606;logOddScore=704.455824370663;pval=0;pvalAdj=0;CTL_count=497;CTL_fpk=3012.12121212121;CTL_logOddScore=-702.884999669265;eFDR=0.4;peak=03;feature=ENSG00000272755;start_position=149264252;end_position=149264816;feature_strand=+;insideFeature=upstream;distancetoFeature=-40231;shortestDistance=40067;fromOverlappingOrNearest=NearestLocation chr1 rtracklayer sequence_feature 149832211 149832375 . * . ensembl_gene_id=ENSG00000270882;external_gene_name=HIST2H4A;description=histone cluster 2 H4 family member a [Source:HGNC Symbol%3bAcc:HGNC:4794];count=1542;fpk=9345.45454545455;logOddScore=699.991599964993;pval=0;pvalAdj=0;CTL_count=1020;CTL_fpk=6181.81818181818;CTL_logOddScore=-694.936101448176;eFDR=0.4;peak=04;feature=ENSG00000270882;start_position=149832659;end_position=149839767;feature_strand=+;insideFeature=upstream;distancetoFeature=-448;shortestDistance=284;fromOverlappingOrNearest=NearestLocation chr1 rtracklayer sequence_feature 161438971 161439135 . * . ensembl_gene_id=ENSG00000283360;external_gene_name=RP11-122G18.10;description=;count=1470;fpk=8909.09090909091;logOddScore=710.083728745714;pval=0;pvalAdj=0;CTL_count=196;CTL_fpk=1187.87878787879;CTL_logOddScore=-707.975166026489;eFDR=0.4;peak=05;feature=ENSG00000283360;start_position=161403409;end_position=161470523;feature_strand=-;insideFeature=inside;distancetoFeature=31552;shortestDistance=31388;fromOverlappingOrNearest=Overlapping chr1 rtracklayer sequence_feature 161438971 161439135 . * . ensembl_gene_id=ENSG00000283317;external_gene_name=RP11-122G18.11;description=;count=1470;fpk=8909.09090909091;logOddScore=710.083728745714;pval=0;pvalAdj=0;CTL_count=196;CTL_fpk=1187.87878787879;CTL_logOddScore=-707.975166026489;eFDR=0.4;peak=05;feature=ENSG00000283317;start_position=161433444;end_position=161440996;feature_strand=-;insideFeature=inside;distancetoFeature=2025;shortestDistance=1861;fromOverlappingOrNearest=NearestLocation chr3 rtracklayer sequence_feature 186505501 186505650 . * . ensembl_gene_id=ENSG00000224406;external_gene_name=LINC02052;description=long intergenic non-protein coding RNA 2052 [Source:HGNC Symbol%3bAcc:HGNC:27372];count=4953;fpk=33020;logOddScore=1097.91622006902;pval=0;pvalAdj=0;CTL_count=1371;CTL_fpk=9140;CTL_logOddScore=-409.132327802848;eFDR=0;peak=06;feature=ENSG00000224406;start_position=186454982;end_position=186493661;feature_strand=-;insideFeature=upstream;distancetoFeature=-11840;shortestDistance=11840;fromOverlappingOrNearest=NearestLocation chr4 rtracklayer sequence_feature 7584306 7584460 . * . ensembl_gene_id=ENSG00000184985;external_gene_name=SORCS2;description=sortilin related VPS10 domain containing receptor 2 [Source:HGNC Symbol%3bAcc:HGNC:16698];count=1088;fpk=7019.35483870968;logOddScore=150.326650352608;pval=0;pvalAdj=0;CTL_count=1509;CTL_fpk=9735.48387096774;CTL_logOddScore=-14.0251602756004;eFDR=0.333333333333333;peak=07;feature=ENSG00000184985;start_position=7192538;end_position=7742836;feature_strand=+;insideFeature=inside;distancetoFeature=391768;shortestDistance=158376;fromOverlappingOrNearest=Overlapping chr4 rtracklayer sequence_feature 7584306 7584460 . * . ensembl_gene_id=ENSG00000266690;external_gene_name=MIR4274;description=microRNA 4274 [Source:HGNC Symbol%3bAcc:HGNC:38194];count=1088;fpk=7019.35483870968;logOddScore=150.326650352608;pval=0;pvalAdj=0;CTL_count=1509;CTL_fpk=9735.48387096774;CTL_logOddScore=-14.0251602756004;eFDR=0.333333333333333;peak=07;feature=ENSG00000266690;start_position=7460028;end_position=7460118;feature_strand=+;insideFeature=downstream;distancetoFeature=124278;shortestDistance=124188;fromOverlappingOrNearest=NearestLocation chr4 rtracklayer sequence_feature 76807151 76807305 . * . ensembl_gene_id=ENSG00000224218;external_gene_name=RP11-359D14.3;description=;count=670;fpk=4322.58064516129;logOddScore=101.952497728732;pval=0;pvalAdj=0;CTL_count=1573;CTL_fpk=10148.3870967742;CTL_logOddScore=-14.0251610864683;eFDR=0.333333333333333;peak=08;feature=ENSG00000224218;start_position=76758554;end_position=76801964;feature_strand=-;insideFeature=upstream;distancetoFeature=-5187;shortestDistance=5187;fromOverlappingOrNearest=NearestLocation chr4 rtracklayer sequence_feature 134082906 134083060 . * . ensembl_gene_id=ENSG00000251388;external_gene_name=RP11-427M20.1;description=;count=726;fpk=4683.87096774194;logOddScore=132.987567877298;pval=0;pvalAdj=0;CTL_count=1211;CTL_fpk=7812.90322580645;CTL_logOddScore=-27.3168020131079;eFDR=0.333333333333333;peak=09;feature=ENSG00000251388;start_position=133871246;end_position=134010690;feature_strand=-;insideFeature=upstream;distancetoFeature=-72216;shortestDistance=72216;fromOverlappingOrNearest=NearestLocation chr6 rtracklayer sequence_feature 4428301 4428450 . * . ensembl_gene_id=ENSG00000201185;external_gene_name=RNA5SP202;description=RNA%2c 5S ribosomal pseudogene 202 [Source:HGNC Symbol%3bAcc:HGNC:43102];count=1321;fpk=8806.66666666667;logOddScore=733.991992128042;pval=0;pvalAdj=0;CTL_count=1411;CTL_fpk=9406.66666666667;CTL_logOddScore=-666.704836381087;eFDR=0.111111111111111;peak=10;feature=ENSG00000201185;start_position=4427963;end_position=4428081;feature_strand=+;insideFeature=downstream;distancetoFeature=338;shortestDistance=220;fromOverlappingOrNearest=NearestLocation chr6 rtracklayer sequence_feature 26031751 26031900 . * . ensembl_gene_id=ENSG00000274267;external_gene_name=HIST1H3B;description=histone cluster 1 H3 family member b [Source:HGNC Symbol%3bAcc:HGNC:4776];count=1363;fpk=9086.66666666667;logOddScore=764.657642948119;pval=0;pvalAdj=0;CTL_count=866;CTL_fpk=5773.33333333333;CTL_logOddScore=-683.512060851617;eFDR=0.111111111111111;peak=11;feature=ENSG00000274267;start_position=26031650;end_position=26032060;feature_strand=-;insideFeature=inside;distancetoFeature=309;shortestDistance=101;fromOverlappingOrNearest=NearestLocation chr6 rtracklayer sequence_feature 26055901 26056050 . * . ensembl_gene_id=ENSG00000187837;external_gene_name=HIST1H1C;description=histone cluster 1 H1 family member c [Source:HGNC Symbol%3bAcc:HGNC:4716];count=2295;fpk=15300;logOddScore=799.327111912411;pval=0;pvalAdj=0;CTL_count=1287;CTL_fpk=8580;CTL_logOddScore=-670.509821548686;eFDR=0.111111111111111;peak=12;feature=ENSG00000187837;start_position=26055787;end_position=26056428;feature_strand=-;insideFeature=inside;distancetoFeature=527;shortestDistance=114;fromOverlappingOrNearest=NearestLocation chr6 rtracklayer sequence_feature 26157301 26157450 . * . ensembl_gene_id=ENSG00000158373;external_gene_name=HIST1H2BD;description=histone cluster 1 H2B family member d [Source:HGNC Symbol%3bAcc:HGNC:4747];count=1976;fpk=13173.3333333333;logOddScore=845.399681435733;pval=0;pvalAdj=0;CTL_count=844;CTL_fpk=5626.66666666667;CTL_logOddScore=-684.196531171044;eFDR=0.111111111111111;peak=13;feature=ENSG00000158373;start_position=26158146;end_position=26171349;feature_strand=+;insideFeature=upstream;distancetoFeature=-845;shortestDistance=696;fromOverlappingOrNearest=NearestLocation chr6 rtracklayer sequence_feature 26205151 26205300 . * . ensembl_gene_id=ENSG00000276966;external_gene_name=HIST1H4E;description=histone cluster 1 H4 family member e [Source:HGNC Symbol%3bAcc:HGNC:4790];count=1692;fpk=11280;logOddScore=836.54748940158;pval=0;pvalAdj=0;CTL_count=776;CTL_fpk=5173.33333333333;CTL_logOddScore=-686.316620528505;eFDR=0.111111111111111;peak=14;feature=ENSG00000276966;start_position=26204552;end_position=26206038;feature_strand=+;insideFeature=inside;distancetoFeature=599;shortestDistance=599;fromOverlappingOrNearest=NearestLocation chr6 rtracklayer sequence_feature 27778201 27778350 . * . ensembl_gene_id=ENSG00000218069;external_gene_name=RSL24D1P1;description=ribosomal L24 domain containing 1 pseudogene 1 [Source:HGNC Symbol%3bAcc:HGNC:13979];count=1592;fpk=10613.3333333333;logOddScore=819.683733169684;pval=0;pvalAdj=0;CTL_count=866;CTL_fpk=5773.33333333333;CTL_logOddScore=-683.512060851617;eFDR=0.111111111111111;peak=15;feature=ENSG00000218069;start_position=27780619;end_position=27781111;feature_strand=-;insideFeature=downstream;distancetoFeature=2910;shortestDistance=2269;fromOverlappingOrNearest=NearestLocation chr6 rtracklayer sequence_feature 27792151 27792300 . * . ensembl_gene_id=ENSG00000218069;external_gene_name=RSL24D1P1;description=ribosomal L24 domain containing 1 pseudogene 1 [Source:HGNC Symbol%3bAcc:HGNC:13979];count=1724;fpk=11493.3333333333;logOddScore=827.535447248081;pval=0;pvalAdj=0;CTL_count=1174;CTL_fpk=7826.66666666667;CTL_logOddScore=-673.985322759228;eFDR=0.111111111111111;peak=16;feature=ENSG00000218069;start_position=27780619;end_position=27781111;feature_strand=-;insideFeature=upstream;distancetoFeature=-11040;shortestDistance=11040;fromOverlappingOrNearest=NearestLocation chr6 rtracklayer sequence_feature 27798901 27799050 . * . ensembl_gene_id=ENSG00000217862;external_gene_name=HIST1H4PS1;description=histone cluster 1 H4 pseudogene 1 [Source:HGNC Symbol%3bAcc:HGNC:4786];count=1697;fpk=11313.3333333333;logOddScore=831.65966333898;pval=0;pvalAdj=0;CTL_count=951;CTL_fpk=6340;CTL_logOddScore=-680.873295519751;eFDR=0.111111111111111;peak=17;feature=ENSG00000217862;start_position=27807075;end_position=27807339;feature_strand=+;insideFeature=upstream;distancetoFeature=-8174;shortestDistance=8025;fromOverlappingOrNearest=NearestLocation chr6 rtracklayer sequence_feature 28950001 28950150 . * . ensembl_gene_id=ENSG00000204709;external_gene_name=LINC01556;description=long intergenic non-protein coding RNA 1556 [Source:HGNC Symbol%3bAcc:HGNC:21195];count=1923;fpk=12820;logOddScore=773.302422534362;pval=0;pvalAdj=0;CTL_count=3240;CTL_fpk=21600;CTL_logOddScore=-611.105676235905;eFDR=0.111111111111111;peak=18;feature=ENSG00000204709;start_position=28943877;end_position=28944537;feature_strand=+;insideFeature=downstream;distancetoFeature=6124;shortestDistance=5464;fromOverlappingOrNearest=NearestLocation chr7 rtracklayer sequence_feature 98479501 98479650 . * . ensembl_gene_id=ENSG00000223402;external_gene_name=AC074121.4;description=;count=715;fpk=4766.66666666667;logOddScore=139.74074910877;pval=0;pvalAdj=0;CTL_count=100;CTL_fpk=666.666666666667;CTL_logOddScore=-21.4810726881224;eFDR=0.75;peak=19;feature=ENSG00000223402;start_position=98478551;end_position=98479225;feature_strand=-;insideFeature=upstream;distancetoFeature=-276;shortestDistance=276;fromOverlappingOrNearest=NearestLocation chr7 rtracklayer sequence_feature 148680901 148681050 . * . ensembl_gene_id=ENSG00000055130;external_gene_name=CUL1;description=cullin 1 [Source:HGNC Symbol%3bAcc:HGNC:2551];count=1744;fpk=11626.6666666667;logOddScore=901.767911185464;pval=0;pvalAdj=0;CTL_count=1225;CTL_fpk=8166.66666666667;CTL_logOddScore=-467.174345432752;eFDR=0.75;peak=20;feature=ENSG00000055130;start_position=148697914;end_position=148801036;feature_strand=+;insideFeature=upstream;distancetoFeature=-17013;shortestDistance=16864;fromOverlappingOrNearest=NearestLocation chr7 rtracklayer sequence_feature 148684201 148684350 . * . ensembl_gene_id=ENSG00000055130;external_gene_name=CUL1;description=cullin 1 [Source:HGNC Symbol%3bAcc:HGNC:2551];count=2348;fpk=15653.3333333333;logOddScore=888.582563349662;pval=0;pvalAdj=0;CTL_count=1432;CTL_fpk=9546.66666666667;CTL_logOddScore=-426.298108120836;eFDR=0.75;peak=21;feature=ENSG00000055130;start_position=148697914;end_position=148801036;feature_strand=+;insideFeature=upstream;distancetoFeature=-13713;shortestDistance=13564;fromOverlappingOrNearest=NearestLocation chr8 rtracklayer sequence_feature 56754881 56755200 . * . ensembl_gene_id=ENSG00000270328;external_gene_name=RP11-33E15.1;description=;count=6183;fpk=19321.875;logOddScore=634.354646183398;pval=0;pvalAdj=0;CTL_count=9796;CTL_fpk=30612.5;CTL_logOddScore=-267.908772987494;eFDR=0;peak=22;feature=ENSG00000270328;start_position=56776283;end_position=56776874;feature_strand=+;insideFeature=upstream;distancetoFeature=-21402;shortestDistance=21083;fromOverlappingOrNearest=NearestLocation chr8 rtracklayer sequence_feature 70602401 70602560 . * . ensembl_gene_id=ENSG00000067167;external_gene_name=TRAM1;description=translocation associated membrane protein 1 [Source:HGNC Symbol%3bAcc:HGNC:20568];count=2316;fpk=14475;logOddScore=1107.77636512677;pval=0;pvalAdj=0;CTL_count=4444;CTL_fpk=27775;CTL_logOddScore=-461.372924196118;eFDR=0;peak=23;feature=ENSG00000067167;start_position=70573442;end_position=70608387;feature_strand=-;insideFeature=inside;distancetoFeature=5986;shortestDistance=5827;fromOverlappingOrNearest=NearestLocation chr9 rtracklayer sequence_feature 35657851 35658000 . * . ensembl_gene_id=ENSG00000269900;external_gene_name=RMRP;description=RNA component of mitochondrial RNA processing endoribonuclease [Source:HGNC Symbol%3bAcc:HGNC:10031];count=8098;fpk=53986.6666666667;logOddScore=1037.53028432763;pval=0;pvalAdj=0;CTL_count=1748;CTL_fpk=11653.3333333333;CTL_logOddScore=-348.530927711583;eFDR=0;peak=24;feature=ENSG00000269900;start_position=35657751;end_position=35658018;feature_strand=-;insideFeature=inside;distancetoFeature=167;shortestDistance=18;fromOverlappingOrNearest=Overlapping chr9 rtracklayer sequence_feature 35657851 35658000 . * . ensembl_gene_id=ENSG00000277027;external_gene_name=RMRP;description=RNA component of mitochondrial RNA processing endoribonuclease [Source:HGNC Symbol%3bAcc:HGNC:10031];count=8098;fpk=53986.6666666667;logOddScore=1037.53028432763;pval=0;pvalAdj=0;CTL_count=1748;CTL_fpk=11653.3333333333;CTL_logOddScore=-348.530927711583;eFDR=0;peak=24;feature=ENSG00000277027;start_position=35657754;end_position=35658017;feature_strand=-;insideFeature=inside;distancetoFeature=166;shortestDistance=17;fromOverlappingOrNearest=NearestLocation chr12 rtracklayer sequence_feature 20704351 20704650 . * . ensembl_gene_id=ENSG00000139155;external_gene_name=SLCO1C1;description=solute carrier organic anion transporter family member 1C1 [Source:HGNC Symbol%3bAcc:HGNC:13819];count=34988;fpk=116626.666666667;logOddScore=25.3135501054436;pval=8.76850852544093e-57;pvalAdj=8.76850852544093e-57;CTL_count=35465;CTL_fpk=118216.666666667;CTL_logOddScore=99.6661231814697;eFDR=8.76850852544093e-57;peak=25;feature=ENSG00000139155;start_position=20695355;end_position=20753386;feature_strand=+;insideFeature=inside;distancetoFeature=8996;shortestDistance=8996;fromOverlappingOrNearest=NearestLocation chr12 rtracklayer sequence_feature 127650751 127650900 . * . ensembl_gene_id=ENSG00000256022;external_gene_name=RP11-526P6.1;description=;count=20212;fpk=134746.666666667;logOddScore=954.018303109518;pval=0;pvalAdj=0;CTL_count=31467;CTL_fpk=209780;CTL_logOddScore=-486.90749987094;eFDR=0;peak=26;feature=ENSG00000256022;start_position=127631248;end_position=127636467;feature_strand=-;insideFeature=upstream;distancetoFeature=-14284;shortestDistance=14284;fromOverlappingOrNearest=NearestLocation chr14 rtracklayer sequence_feature 50053531 50053685 . * . ensembl_gene_id=ENSG00000214900;external_gene_name=LINC01588;description=long intergenic non-protein coding RNA 1588 [Source:HGNC Symbol%3bAcc:HGNC:27503];count=7260;fpk=46838.7096774194;logOddScore=169.162637564138;pval=0;pvalAdj=0;CTL_count=5110;CTL_fpk=32967.7419354839;CTL_logOddScore=-41.4218578457396;eFDR=0;peak=27;feature=ENSG00000214900;start_position=49927571;end_position=50092643;feature_strand=-;insideFeature=inside;distancetoFeature=39112;shortestDistance=38958;fromOverlappingOrNearest=Overlapping chr14 rtracklayer sequence_feature 50053531 50053685 . * . ensembl_gene_id=ENSG00000243038;external_gene_name=RP11-58E21.1;description=;count=7260;fpk=46838.7096774194;logOddScore=169.162637564138;pval=0;pvalAdj=0;CTL_count=5110;CTL_fpk=32967.7419354839;CTL_logOddScore=-41.4218578457396;eFDR=0;peak=27;feature=ENSG00000243038;start_position=50052857;end_position=50053569;feature_strand=+;insideFeature=overlapEnd;distancetoFeature=674;shortestDistance=38;fromOverlappingOrNearest=NearestLocation chr14 rtracklayer sequence_feature 50329121 50329430 . * . ensembl_gene_id=ENSG00000125375;external_gene_name=ATP5S;description=ATP synthase%2c H+ transporting%2c mitochondrial Fo complex subunit s (factor B) [Source:HGNC Symbol%3bAcc:HGNC:18799];count=14986;fpk=48341.935483871;logOddScore=19.5041152351982;pval=5.19696515772827e-45;pvalAdj=5.19696515772827e-45;CTL_count=12804;CTL_fpk=41303.2258064516;CTL_logOddScore=117.18002061674;eFDR=5.19696515772827e-45;peak=28;feature=ENSG00000125375;start_position=50312326;end_position=50335558;feature_strand=+;insideFeature=inside;distancetoFeature=16795;shortestDistance=6128;fromOverlappingOrNearest=Overlapping chr14 rtracklayer sequence_feature 50329121 50329430 . * . ensembl_gene_id=ENSG00000259071;external_gene_name=RP11-247L20.4;description=;count=14986;fpk=48341.935483871;logOddScore=19.5041152351982;pval=5.19696515772827e-45;pvalAdj=5.19696515772827e-45;CTL_count=12804;CTL_fpk=41303.2258064516;CTL_logOddScore=117.18002061674;eFDR=5.19696515772827e-45;peak=28;feature=ENSG00000259071;start_position=50326526;end_position=50327909;feature_strand=-;insideFeature=upstream;distancetoFeature=-1212;shortestDistance=1212;fromOverlappingOrNearest=NearestLocation chr14 rtracklayer sequence_feature 50329121 50329430 . * . ensembl_gene_id=ENSG00000100490;external_gene_name=CDKL1;description=cyclin dependent kinase like 1 [Source:HGNC Symbol%3bAcc:HGNC:1781];count=14986;fpk=48341.935483871;logOddScore=19.5041152351982;pval=5.19696515772827e-45;pvalAdj=5.19696515772827e-45;CTL_count=12804;CTL_fpk=41303.2258064516;CTL_logOddScore=117.18002061674;eFDR=5.19696515772827e-45;peak=28;feature=ENSG00000100490;start_position=50329404;end_position=50416461;feature_strand=-;insideFeature=overlapEnd;distancetoFeature=87340;shortestDistance=26;fromOverlappingOrNearest=Overlapping chr15 rtracklayer sequence_feature 65588406 65588560 . * . ensembl_gene_id=ENSG00000138614;external_gene_name=INTS14;description=integrator complex subunit 14 [Source:HGNC Symbol%3bAcc:HGNC:25372];count=465;fpk=3000;logOddScore=290.52080726258;pval=0;pvalAdj=0;CTL_count=994;CTL_fpk=6412.90322580645;CTL_logOddScore=-187.712445086309;eFDR=0;peak=29;feature=ENSG00000138614;start_position=65578753;end_position=65611289;feature_strand=-;insideFeature=inside;distancetoFeature=22883;shortestDistance=9653;fromOverlappingOrNearest=NearestLocation chr15 rtracklayer sequence_feature 65597086 65597240 . * . ensembl_gene_id=ENSG00000138614;external_gene_name=INTS14;description=integrator complex subunit 14 [Source:HGNC Symbol%3bAcc:HGNC:25372];count=568;fpk=3664.51612903226;logOddScore=272.289695843942;pval=0;pvalAdj=0;CTL_count=959;CTL_fpk=6187.09677419355;CTL_logOddScore=-167.198971022168;eFDR=0;peak=30;feature=ENSG00000138614;start_position=65578753;end_position=65611289;feature_strand=-;insideFeature=inside;distancetoFeature=14203;shortestDistance=14049;fromOverlappingOrNearest=NearestLocation chr15 rtracklayer sequence_feature 66795081 66795235 . * . ensembl_gene_id=ENSG00000270490;external_gene_name=RP11-622C24.1;description=;count=224;fpk=1445.16129032258;logOddScore=25.8962257103952;pval=2.94130808171686e-20;pvalAdj=4.41196212257529e-20;CTL_count=187;CTL_fpk=1206.45161290323;CTL_logOddScore=20.2228578200804;eFDR=0.25;peak=31;feature=ENSG00000270490;start_position=66808404;end_position=66810560;feature_strand=+;insideFeature=upstream;distancetoFeature=-13323;shortestDistance=13169;fromOverlappingOrNearest=NearestLocation chr15 rtracklayer sequence_feature 96289101 96289255 . * . ensembl_gene_id=ENSG00000275443;external_gene_name=RP11-759A24.3;description=;count=326;fpk=2103.22580645161;logOddScore=39.4769943565394;pval=1.07245910953338e-41;pvalAdj=2.14491821906676e-41;CTL_count=253;CTL_fpk=1632.25806451613;CTL_logOddScore=42.4232280592441;eFDR=1.07245910953338e-41;peak=32;feature=ENSG00000275443;start_position=95990582;end_position=96300990;feature_strand=+;insideFeature=inside;distancetoFeature=298519;shortestDistance=11735;fromOverlappingOrNearest=Overlapping chr15 rtracklayer sequence_feature 96289101 96289255 . * . ensembl_gene_id=ENSG00000247809;external_gene_name=NR2F2-AS1;description=NR2F2 antisense RNA 1 [Source:HGNC Symbol%3bAcc:HGNC:44222];count=326;fpk=2103.22580645161;logOddScore=39.4769943565394;pval=1.07245910953338e-41;pvalAdj=2.14491821906676e-41;CTL_count=253;CTL_fpk=1632.25806451613;CTL_logOddScore=42.4232280592441;eFDR=1.07245910953338e-41;peak=32;feature=ENSG00000247809;start_position=96110040;end_position=96327361;feature_strand=-;insideFeature=inside;distancetoFeature=38260;shortestDistance=38106;fromOverlappingOrNearest=Overlapping chr15 rtracklayer sequence_feature 96289101 96289255 . * . ensembl_gene_id=ENSG00000279645;external_gene_name=RP11-759A24.1;description=;count=326;fpk=2103.22580645161;logOddScore=39.4769943565394;pval=1.07245910953338e-41;pvalAdj=2.14491821906676e-41;CTL_count=253;CTL_fpk=1632.25806451613;CTL_logOddScore=42.4232280592441;eFDR=1.07245910953338e-41;peak=32;feature=ENSG00000279645;start_position=96285068;end_position=96289265;feature_strand=-;insideFeature=inside;distancetoFeature=164;shortestDistance=10;fromOverlappingOrNearest=NearestLocation chr16 rtracklayer sequence_feature 33963041 33963410 . * . ensembl_gene_id=ENSG00000270401;external_gene_name=RP11-812E19.14;description=;count=77160;fpk=208540.540540541;logOddScore=356.455343498576;pval=0;pvalAdj=0;CTL_count=114695;CTL_fpk=309986.486486487;CTL_logOddScore=284.102439049421;eFDR=0;peak=33;feature=ENSG00000270401;start_position=33965655;end_position=33966091;feature_strand=-;insideFeature=downstream;distancetoFeature=3050;shortestDistance=2245;fromOverlappingOrNearest=NearestLocation chr16 rtracklayer sequence_feature 33963596 33963780 . * . ensembl_gene_id=ENSG00000270401;external_gene_name=RP11-812E19.14;description=;count=45757;fpk=247335.135135135;logOddScore=213.321073301306;pval=0;pvalAdj=0;CTL_count=58280;CTL_fpk=315027.027027027;CTL_logOddScore=276.755413273969;eFDR=0;peak=34;feature=ENSG00000270401;start_position=33965655;end_position=33966091;feature_strand=-;insideFeature=downstream;distancetoFeature=2495;shortestDistance=1875;fromOverlappingOrNearest=NearestLocation chr18 rtracklayer sequence_feature 77773051 77773200 . * . ensembl_gene_id=ENSG00000252260;external_gene_name=RNA5SP461;description=RNA%2c 5S ribosomal pseudogene 461 [Source:HGNC Symbol%3bAcc:HGNC:43361];count=55993;fpk=373286.666666667;logOddScore=0.184081242769025;pval=0.448111225885122;pvalAdj=0.448111225885122;CTL_count=80915;CTL_fpk=539433.333333333;CTL_logOddScore=688.317782032466;eFDR=0.448111225885122;peak=35;feature=ENSG00000252260;start_position=77863464;end_position=77863567;feature_strand=-;insideFeature=downstream;distancetoFeature=90516;shortestDistance=90264;fromOverlappingOrNearest=NearestLocation chr19 rtracklayer sequence_feature 24183601 24183750 . * . ensembl_gene_id=ENSG00000268442;external_gene_name=CTD-2027I19.2;description=;count=5128;fpk=34186.6666666667;logOddScore=295.888812801031;pval=0;pvalAdj=0;CTL_count=8899;CTL_fpk=59326.6666666667;CTL_logOddScore=214.602039579189;eFDR=0;peak=36;feature=ENSG00000268442;start_position=24162370;end_position=24163425;feature_strand=-;insideFeature=upstream;distancetoFeature=-20176;shortestDistance=20176;fromOverlappingOrNearest=NearestLocation chr19 rtracklayer sequence_feature 24184051 24184200 . * . ensembl_gene_id=ENSG00000268442;external_gene_name=CTD-2027I19.2;description=;count=2330;fpk=15533.3333333333;logOddScore=175.21287771878;pval=0;pvalAdj=0;CTL_count=5978;CTL_fpk=39853.3333333333;CTL_logOddScore=-187.40431123092;eFDR=0;peak=37;feature=ENSG00000268442;start_position=24162370;end_position=24163425;feature_strand=-;insideFeature=upstream;distancetoFeature=-20626;shortestDistance=20626;fromOverlappingOrNearest=NearestLocation chr19 rtracklayer sequence_feature 24184501 24184950 . * . ensembl_gene_id=ENSG00000268442;external_gene_name=CTD-2027I19.2;description=;count=9812;fpk=21804.4444444444;logOddScore=497.344628049377;pval=0;pvalAdj=0;CTL_count=14113;CTL_fpk=31362.2222222222;CTL_logOddScore=-437.741025048568;eFDR=0;peak=38;feature=ENSG00000268442;start_position=24162370;end_position=24163425;feature_strand=-;insideFeature=upstream;distancetoFeature=-21076;shortestDistance=21076;fromOverlappingOrNearest=NearestLocation chr19 rtracklayer sequence_feature 24187051 24187350 . * . ensembl_gene_id=ENSG00000268442;external_gene_name=CTD-2027I19.2;description=;count=10156;fpk=33853.3333333333;logOddScore=536.716439055874;pval=0;pvalAdj=0;CTL_count=9613;CTL_fpk=32043.3333333333;CTL_logOddScore=-273.380334534951;eFDR=0;peak=39;feature=ENSG00000268442;start_position=24162370;end_position=24163425;feature_strand=-;insideFeature=upstream;distancetoFeature=-23626;shortestDistance=23626;fromOverlappingOrNearest=NearestLocation chr19 rtracklayer sequence_feature 36066601 36066900 . * . ensembl_gene_id=ENSG00000075702;external_gene_name=WDR62;description=WD repeat domain 62 [Source:HGNC Symbol%3bAcc:HGNC:24502];count=53238;fpk=177460;logOddScore=157.841322520113;pval=0;pvalAdj=0;CTL_count=65954;CTL_fpk=219846.666666667;CTL_logOddScore=-5.89298420318619;eFDR=0;peak=40;feature=ENSG00000075702;start_position=36054881;end_position=36105106;feature_strand=+;insideFeature=inside;distancetoFeature=11720;shortestDistance=11720;fromOverlappingOrNearest=Overlapping chr19 rtracklayer sequence_feature 36066601 36066900 . * . ensembl_gene_id=ENSG00000280023;external_gene_name=LLNLR-276H7.1;description=;count=53238;fpk=177460;logOddScore=157.841322520113;pval=0;pvalAdj=0;CTL_count=65954;CTL_fpk=219846.666666667;CTL_logOddScore=-5.89298420318619;eFDR=0;peak=40;feature=ENSG00000280023;start_position=36070239;end_position=36071070;feature_strand=+;insideFeature=upstream;distancetoFeature=-3638;shortestDistance=3339;fromOverlappingOrNearest=NearestLocation chr20 rtracklayer sequence_feature 2634901 2635050 . * . ensembl_gene_id=ENSG00000149488;external_gene_name=TMC2;description=transmembrane channel like 2 [Source:HGNC Symbol%3bAcc:HGNC:16527];count=34;fpk=226.666666666667;logOddScore=156.207446676187;pval=0.734103218153833;pvalAdj=1;CTL_count=15;CTL_fpk=100;CTL_logOddScore=-155.42009163053;eFDR=0.734103218153833;peak=41;feature=ENSG00000149488;start_position=2536607;end_position=2641784;feature_strand=+;insideFeature=inside;distancetoFeature=98294;shortestDistance=6734;fromOverlappingOrNearest=Overlapping chr20 rtracklayer sequence_feature 2634901 2635050 . * . ensembl_gene_id=ENSG00000101361;external_gene_name=NOP56;description=NOP56 ribonucleoprotein [Source:HGNC Symbol%3bAcc:HGNC:15911];count=34;fpk=226.666666666667;logOddScore=156.207446676187;pval=0.734103218153833;pvalAdj=1;CTL_count=15;CTL_fpk=100;CTL_logOddScore=-155.42009163053;eFDR=0.734103218153833;peak=41;feature=ENSG00000101361;start_position=2652145;end_position=2658393;feature_strand=+;insideFeature=upstream;distancetoFeature=-17244;shortestDistance=17095;fromOverlappingOrNearest=NearestLocation chr20 rtracklayer sequence_feature 2636701 2637000 . * . ensembl_gene_id=ENSG00000149488;external_gene_name=TMC2;description=transmembrane channel like 2 [Source:HGNC Symbol%3bAcc:HGNC:16527];count=65;fpk=216.666666666667;logOddScore=179.820434094611;pval=3.60414303992951e-13;pvalAdj=1.15332577277744e-12;CTL_count=17;CTL_fpk=56.6666666666667;CTL_logOddScore=-178.215722162076;eFDR=0.6;peak=42;feature=ENSG00000149488;start_position=2536607;end_position=2641784;feature_strand=+;insideFeature=inside;distancetoFeature=100094;shortestDistance=4784;fromOverlappingOrNearest=Overlapping chr20 rtracklayer sequence_feature 2636701 2637000 . * . ensembl_gene_id=ENSG00000101361;external_gene_name=NOP56;description=NOP56 ribonucleoprotein [Source:HGNC Symbol%3bAcc:HGNC:15911];count=65;fpk=216.666666666667;logOddScore=179.820434094611;pval=3.60414303992951e-13;pvalAdj=1.15332577277744e-12;CTL_count=17;CTL_fpk=56.6666666666667;CTL_logOddScore=-178.215722162076;eFDR=0.6;peak=42;feature=ENSG00000101361;start_position=2652145;end_position=2658393;feature_strand=+;insideFeature=upstream;distancetoFeature=-15444;shortestDistance=15145;fromOverlappingOrNearest=NearestLocation chr20 rtracklayer sequence_feature 2637601 2637750 . * . ensembl_gene_id=ENSG00000149488;external_gene_name=TMC2;description=transmembrane channel like 2 [Source:HGNC Symbol%3bAcc:HGNC:16527];count=39;fpk=260;logOddScore=148.915869347781;pval=0.998793679198317;pvalAdj=1;CTL_count=19;CTL_fpk=126.666666666667;CTL_logOddScore=-145.527485871324;eFDR=0.998793679198317;peak=43;feature=ENSG00000149488;start_position=2536607;end_position=2641784;feature_strand=+;insideFeature=inside;distancetoFeature=100994;shortestDistance=4034;fromOverlappingOrNearest=Overlapping chr20 rtracklayer sequence_feature 2637601 2637750 . * . ensembl_gene_id=ENSG00000101361;external_gene_name=NOP56;description=NOP56 ribonucleoprotein [Source:HGNC Symbol%3bAcc:HGNC:15911];count=39;fpk=260;logOddScore=148.915869347781;pval=0.998793679198317;pvalAdj=1;CTL_count=19;CTL_fpk=126.666666666667;CTL_logOddScore=-145.527485871324;eFDR=0.998793679198317;peak=43;feature=ENSG00000101361;start_position=2652145;end_position=2658393;feature_strand=+;insideFeature=upstream;distancetoFeature=-14544;shortestDistance=14395;fromOverlappingOrNearest=NearestLocation chr20 rtracklayer sequence_feature 17943451 17943600 . * . ensembl_gene_id=ENSG00000089006;external_gene_name=SNX5;description=sorting nexin 5 [Source:HGNC Symbol%3bAcc:HGNC:14969];count=68;fpk=453.333333333333;logOddScore=190.011284550608;pval=2.76446266868799e-26;pvalAdj=1.10578506747519e-25;CTL_count=33;CTL_fpk=220;CTL_logOddScore=-181.265301683801;eFDR=0.75;peak=44;feature=ENSG00000089006;start_position=17941597;end_position=17968980;feature_strand=-;insideFeature=inside;distancetoFeature=25529;shortestDistance=1854;fromOverlappingOrNearest=Overlapping chr20 rtracklayer sequence_feature 17943451 17943600 . * . ensembl_gene_id=ENSG00000212232;external_gene_name=SNORD17;description=small nucleolar RNA%2c C/D box 17 [Source:HGNC Symbol%3bAcc:HGNC:32713];count=68;fpk=453.333333333333;logOddScore=190.011284550608;pval=2.76446266868799e-26;pvalAdj=1.10578506747519e-25;CTL_count=33;CTL_fpk=220;CTL_logOddScore=-181.265301683801;eFDR=0.75;peak=44;feature=ENSG00000212232;start_position=17962710;end_position=17962946;feature_strand=-;insideFeature=downstream;distancetoFeature=19495;shortestDistance=19110;fromOverlappingOrNearest=NearestLocation chr20 rtracklayer sequence_feature 26189251 26189550 . * . ensembl_gene_id=ENSG00000227195;external_gene_name=MIR663AHG;description=MIR663A host gene [Source:HGNC Symbol%3bAcc:HGNC:27662];count=65;fpk=216.666666666667;logOddScore=156.465577502086;pval=0.705399882371413;pvalAdj=1;CTL_count=30;CTL_fpk=100;CTL_logOddScore=-155.71556813297;eFDR=0.705399882371413;peak=45;feature=ENSG00000227195;start_position=26186920;end_position=26251526;feature_strand=-;insideFeature=inside;distancetoFeature=62275;shortestDistance=2331;fromOverlappingOrNearest=Overlapping chr20 rtracklayer sequence_feature 26189251 26189550 . * . ensembl_gene_id=ENSG00000238129;external_gene_name=RP3-410C9.2;description=;count=65;fpk=216.666666666667;logOddScore=156.465577502086;pval=0.705399882371413;pvalAdj=1;CTL_count=30;CTL_fpk=100;CTL_logOddScore=-155.71556813297;eFDR=0.705399882371413;peak=45;feature=ENSG00000238129;start_position=26188408;end_position=26196891;feature_strand=+;insideFeature=inside;distancetoFeature=843;shortestDistance=843;fromOverlappingOrNearest=NearestLocation chr20 rtracklayer sequence_feature 37053751 37053900 . * . ensembl_gene_id=ENSG00000080839;external_gene_name=RBL1;description=RB transcriptional corepressor like 1 [Source:HGNC Symbol%3bAcc:HGNC:9893];count=45;fpk=300;logOddScore=153.646293989566;pval=0.929403512263888;pvalAdj=1;CTL_count=18;CTL_fpk=120;CTL_logOddScore=-147.916921968605;eFDR=0.929403512263888;peak=46;feature=ENSG00000080839;start_position=36996349;end_position=37095995;feature_strand=-;insideFeature=inside;distancetoFeature=42244;shortestDistance=42095;fromOverlappingOrNearest=Overlapping chr20 rtracklayer sequence_feature 37053751 37053900 . * . ensembl_gene_id=ENSG00000226144;external_gene_name=RPS27AP3;description=ribosomal protein S27a pseudogene 3 [Source:HGNC Symbol%3bAcc:HGNC:16538];count=45;fpk=300;logOddScore=153.646293989566;pval=0.929403512263888;pvalAdj=1;CTL_count=18;CTL_fpk=120;CTL_logOddScore=-147.916921968605;eFDR=0.929403512263888;peak=46;feature=ENSG00000226144;start_position=37049254;end_position=37049707;feature_strand=+;insideFeature=downstream;distancetoFeature=4497;shortestDistance=4044;fromOverlappingOrNearest=NearestLocation chr20 rtracklayer sequence_feature 37055851 37056000 . * . ensembl_gene_id=ENSG00000080839;external_gene_name=RBL1;description=RB transcriptional corepressor like 1 [Source:HGNC Symbol%3bAcc:HGNC:9893];count=40;fpk=266.666666666667;logOddScore=144.728154104221;pval=0.999995008131246;pvalAdj=1;CTL_count=21;CTL_fpk=140;CTL_logOddScore=-140.896939618879;eFDR=0.999995008131246;peak=47;feature=ENSG00000080839;start_position=36996349;end_position=37095995;feature_strand=-;insideFeature=inside;distancetoFeature=40144;shortestDistance=39995;fromOverlappingOrNearest=Overlapping chr20 rtracklayer sequence_feature 37055851 37056000 . * . ensembl_gene_id=ENSG00000226144;external_gene_name=RPS27AP3;description=ribosomal protein S27a pseudogene 3 [Source:HGNC Symbol%3bAcc:HGNC:16538];count=40;fpk=266.666666666667;logOddScore=144.728154104221;pval=0.999995008131246;pvalAdj=1;CTL_count=21;CTL_fpk=140;CTL_logOddScore=-140.896939618879;eFDR=0.999995008131246;peak=47;feature=ENSG00000226144;start_position=37049254;end_position=37049707;feature_strand=+;insideFeature=downstream;distancetoFeature=6597;shortestDistance=6144;fromOverlappingOrNearest=NearestLocation chr20 rtracklayer sequence_feature 37062451 37062600 . * . ensembl_gene_id=ENSG00000080839;external_gene_name=RBL1;description=RB transcriptional corepressor like 1 [Source:HGNC Symbol%3bAcc:HGNC:9893];count=70;fpk=466.666666666667;logOddScore=151.836532852854;pval=0.980737685149653;pvalAdj=1;CTL_count=20;CTL_fpk=133.333333333333;CTL_logOddScore=-143.188411124756;eFDR=0.980737685149653;peak=48;feature=ENSG00000080839;start_position=36996349;end_position=37095995;feature_strand=-;insideFeature=inside;distancetoFeature=33544;shortestDistance=33395;fromOverlappingOrNearest=Overlapping chr20 rtracklayer sequence_feature 37062451 37062600 . * . ensembl_gene_id=ENSG00000226144;external_gene_name=RPS27AP3;description=ribosomal protein S27a pseudogene 3 [Source:HGNC Symbol%3bAcc:HGNC:16538];count=70;fpk=466.666666666667;logOddScore=151.836532852854;pval=0.980737685149653;pvalAdj=1;CTL_count=20;CTL_fpk=133.333333333333;CTL_logOddScore=-143.188411124756;eFDR=0.980737685149653;peak=48;feature=ENSG00000226144;start_position=37049254;end_position=37049707;feature_strand=+;insideFeature=downstream;distancetoFeature=13197;shortestDistance=12744;fromOverlappingOrNearest=NearestLocation chr20 rtracklayer sequence_feature 42087001 42087150 . * . ensembl_gene_id=ENSG00000228959;external_gene_name=RP5-1121H13.3;description=;count=34;fpk=226.666666666667;logOddScore=153.646907012039;pval=0.929376138814548;pvalAdj=1;CTL_count=16;CTL_fpk=106.666666666667;CTL_logOddScore=-152.859552099431;eFDR=0.929376138814548;peak=49;feature=ENSG00000228959;start_position=42014034;end_position=42015478;feature_strand=-;insideFeature=upstream;distancetoFeature=-71523;shortestDistance=71523;fromOverlappingOrNearest=NearestLocation chr20 rtracklayer sequence_feature 42087001 42087150 . * . ensembl_gene_id=ENSG00000196090;external_gene_name=PTPRT;description=protein tyrosine phosphatase%2c receptor type T [Source:HGNC Symbol%3bAcc:HGNC:9682];count=34;fpk=226.666666666667;logOddScore=153.646907012039;pval=0.929376138814548;pvalAdj=1;CTL_count=16;CTL_fpk=106.666666666667;CTL_logOddScore=-152.859552099431;eFDR=0.929376138814548;peak=49;feature=ENSG00000196090;start_position=42072752;end_position=43189970;feature_strand=-;insideFeature=inside;distancetoFeature=1102969;shortestDistance=14249;fromOverlappingOrNearest=Overlapping chr22 rtracklayer sequence_feature 43011301 43011450 . * . ensembl_gene_id=ENSG00000100266;external_gene_name=PACSIN2;description=protein kinase C and casein kinase substrate in neurons 2 [Source:HGNC Symbol%3bAcc:HGNC:8571];count=4155;fpk=27700;logOddScore=243.274029640767;pval=0;pvalAdj=0;CTL_count=1400;CTL_fpk=9333.33333333333;CTL_logOddScore=293.104921974988;eFDR=0;peak=50;feature=ENSG00000100266;start_position=42835412;end_position=43015145;feature_strand=-;insideFeature=inside;distancetoFeature=3844;shortestDistance=3695;fromOverlappingOrNearest=NearestLocation chrX rtracklayer sequence_feature 108297761 108297920 . * . ensembl_gene_id=ENSG00000197565;external_gene_name=COL4A6;description=collagen type IV alpha 6 chain [Source:HGNC Symbol%3bAcc:HGNC:2208];count=5043;fpk=31518.75;logOddScore=209.283153837783;pval=0;pvalAdj=0;CTL_count=7616;CTL_fpk=47600;CTL_logOddScore=-26.2390813896972;eFDR=0;peak=51;feature=ENSG00000197565;start_position=108155607;end_position=108439497;feature_strand=-;insideFeature=inside;distancetoFeature=141736;shortestDistance=141577;fromOverlappingOrNearest=Overlapping chrX rtracklayer sequence_feature 108297761 108297920 . * . ensembl_gene_id=ENSG00000189372;external_gene_name=RP6-149D17.1;description=;count=5043;fpk=31518.75;logOddScore=209.283153837783;pval=0;pvalAdj=0;CTL_count=7616;CTL_fpk=47600;CTL_logOddScore=-26.2390813896972;eFDR=0;peak=51;feature=ENSG00000189372;start_position=108383398;end_position=108383993;feature_strand=+;insideFeature=upstream;distancetoFeature=-85637;shortestDistance=85478;fromOverlappingOrNearest=NearestLocation