outDir <- file.path(getwd(), "RIPSeeker_FUBP2_vs_IgG_bothStrands")
reverseComplement = TRUE, genomeBuild = "hg19", 
chrM: Optimal bin size: 250 bp
chr2: Optimal bin size: 210 bp
chr3: Optimal bin size: 200 bp
chr4: Optimal bin size: 200 bp
chr7: Optimal bin size: 200 bp
chr6: Optimal bin size: 200 bp
chr11: Optimal bin size: 215 bp
chr8: Optimal bin size: 200 bp
chr10: Optimal bin size: 200 bp
chr15: Optimal bin size: 200 bp
chr12: Optimal bin size: 200 bp
chr17: Optimal bin size: 215 bp
chr19: Optimal bin size: 200 bp
chr14: Optimal bin size: 200 bp
chrX: Optimal bin size: 200 bp
chr16: Optimal bin size: 210 bp
chr18: Optimal bin size: 200 bp
chr20: Optimal bin size: 200 bp
chr22: Optimal bin size: 205 bp
chrY: Optimal bin size: 200 bp


outDir <- file.path(getwd(), "RIPSeeker_FUBP2_vs_IgG_bothStrands_noRC")
reverseComplement = FALSE
chrM: Optimal bin size: 200 bp
chr2: Optimal bin size: 200 bp
chr3: Optimal bin size: 200 bp
chr4: Optimal bin size: 205 bp
chr5: Optimal bin size: 205 bp
chr6: Optimal bin size: 215 bp
chr7: Optimal bin size: 205 bp
chr8: Optimal bin size: 215 bp
chr9: Optimal bin size: 215 bp
chr11: Optimal bin size: 220 bp
chr13: Optimal bin size: 210 bp
chr12: Optimal bin size: 215 bp
chr15: Optimal bin size: 205 bp
chr14: Optimal bin size: 205 bp
chr19: Optimal bin size: 240 bp
chr21: Optimal bin size: 205 bp
chrX: Optimal bin size: 215 bp
chr16: Optimal bin size: 210 bp
chr18: Optimal bin size: 200 bp



outDir <- file.path(getwd(), "RIPSeeker_FUBP2_vs_IgG_minus")
                   reverseComplement = TRUE, genomeBuild = "hg19", 
                   strandType = "-", 

chrM: Optimal bin size: 250 bp
chr2: Optimal bin size: 205 bp
chr4: Optimal bin size: 200 bp
chr3: Optimal bin size: 200 bp
chr6: Optimal bin size: 200 bp
chr8: Optimal bin size: 205 bp
chr5: Optimal bin size: 200 bp
chr7: Optimal bin size: 200 bp
chr9: Optimal bin size: 270 bp
chr10: Optimal bin size: 205 bp
chr11: Optimal bin size: 215 bp
chr13: Optimal bin size: 200 bp
chr12: Optimal bin size: 200 bp
chr15: Optimal bin size: 200 bp
chr14: Optimal bin size: 200 bp
chr17: Optimal bin size: 200 bp
chr16: Optimal bin size: 210 bp
chr19: Optimal bin size: 200 bp
chr21: Optimal bin size: 200 bp
chr18: Optimal bin size: 200 bp
chrX: Optimal bin size: 200 bp
chr20: Optimal bin size: 200 bp




/data/images/proton2/run341/www/RIPSeeker_bcatMono_vs_IgG_bothStrands/RIPregions.gff

.. ripSeeker1.txt