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Summary
Analysis summary
Summary:
The raw bam files, one for each RNA-Seq sample, were summarized to read counts table, using the Bioconductor package GenomicRanges. In the final read counts table, each row represented each column one RNA-Seq sample and each cell, the corresponding read counts associated with each row and column.The gene counts table was normalized for inherent systematic or experimental biases (e.g. sequencing depth, gene length, GC content bias etc.) using the Bioconductor package DESeq after removing genes that had zero counts over all the RNA-Seq samples (18538 genes). The output of the normalization algorithm was a table with normalized counts, which can be used for differential expression analysis with statistical algorithms developed specifically for count data. Prior to the statistical testing procedure, the gene read counts were filtered for possible artifacts that could affect the subsequent statistical testing procedures. Genes presenting any of the following were excluded from further analysis: i) genes with length less than 500 (7912 genes), ii) genes whose average reads per 100 bp was less than the 25th quantile of the total normalized distribution of average reads per 100bp (0 genes with cutoff value 0 average reads per 100 bp), iii) genes with read counts below the median read counts of the total normalized count distribution (10474 genes with cutoff value 1 normalized read counts). The total number of genes excluded due to the application of gene filters was 8142. The total (unified) number of genes excluded due to the application of all filters was 33388. The resulting gene counts table was subjected to differential expression analysis for the contrasts Ldc10Ctrl versus Ldc10Ig3, Ldc10Ctrl versus Ldc10Ig4, Ldc10Ig3 versus Ldc10Ig4, Con versus Dox using the Bioconductor package DESeq. The final numbers of differentially expressed genes were (per contrast): for the contrast Ldc10Ctrl versus Ldc10Ig3, 890 (110) statistically significant genes were found with a p-value (FDR or adjusted p-value) threshold of 0.05 and of these, 414 (76) were up-regulated, 253 (34) were down-regulated and 223 (0) were not differentially expressed according to an absolute fold change cutoff value of 1 in log2 scale, for the contrast Ldc10Ctrl versus Ldc10Ig4, 1291 (105) statistically significant genes were found with a p-value (FDR or adjusted p-value) threshold of 0.05 and of these, 580 (67) were up-regulated, 314 (38) were down-regulated and 397 (0) were not differentially expressed according to an absolute fold change cutoff value of 1 in log2 scale, for the contrast Ldc10Ig3 versus Ldc10Ig4, 588 (47) statistically significant genes were found with a p-value (FDR or adjusted p-value) threshold of 0.05 and of these, 252 (15) were up-regulated, 167 (32) were down-regulated and 169 (0) were not differentially expressed according to an absolute fold change cutoff value of 1 in log2 scale, for the contrast Con versus Dox, 139 (3) statistically significant genes were found with a p-value (FDR or adjusted p-value) threshold of 0.05 and of these, 73 (3) were up-regulated, 44 (0) were down-regulated and 22 (0) were not differentially expressed according to an absolute fold change cutoff value of 1 in log2 scale. Literature references for all the algorithms used can be found at the end of this report.
Read counts file: imported sam/bam/bed files
Conditions: Ldc10Ctrl, Ldc10Ig3, Ldc10Ig4, Con, Dox
Samples included: PH3R16-Ldc10-Ctrl3, PH3R14-Ldc10-Ctrl1, PH3R15-Ldc10-Ctrl2, PH3R17-Ldc10-Ig3-1, PH3R18-Ldc10-Ig3-2, PH3R19-Ldc10-Ig3-3, PH3R20-Ldc10-Ig4-1, PH3R21-Ldc10-Ig4-2, PH3R22-Ldc10-Ig4-3, PH3R8-Con1, PH3R9-Con2, PH3R10-Con3, PH3R11-Dox1, PH3R12-Dox2, PH3R13-Dox3
Samples excluded:
none
Requested contrasts: Ldc10Ctrl_vs_Ldc10Ig3, Ldc10Ctrl_vs_Ldc10Ig4, Ldc10Ig3_vs_Ldc10Ig4, Con_vs_Dox
Library sizes:
- PH3R16-Ldc10-Ctrl3: 3964582
- PH3R14-Ldc10-Ctrl1: 3572415
- PH3R15-Ldc10-Ctrl2: 4420013
- PH3R17-Ldc10-Ig3-1: 3472385
- PH3R18-Ldc10-Ig3-2: 4169907
- PH3R19-Ldc10-Ig3-3: 4081785
- PH3R20-Ldc10-Ig4-1: 4469650
- PH3R21-Ldc10-Ig4-2: 3535900
- PH3R22-Ldc10-Ig4-3: 4053011
- PH3R8-Con1: 3229669
- PH3R9-Con2: 3849637
- PH3R10-Con3: 4382656
- PH3R11-Dox1: 3878739
- PH3R12-Dox2: 2976629
- PH3R13-Dox3: 2867511
Annotation: download
Organism: human ( Homo sapiens), genome version alias hg19
Annotation source: Ensembl genomes
Count type: utr
Exon filters:
none applied
Gene filters:
length, avg.reads, expression, biotype - avg.reads
- average.per.bp: 100
- quantile: 0.25
- expression
- median: TRUE
- mean: FALSE
- quantile: NA
- known: NA
- custom: NA
- biotype
- pseudogene: FALSE
- lincRNA: FALSE
- protein_coding: FALSE
- antisense: FALSE
- processed_transcript: FALSE
- snRNA: FALSE
- sense_intronic: FALSE
- miRNA: FALSE
- misc_RNA: FALSE
- snoRNA: FALSE
- rRNA: TRUE
- polymorphic_pseudogene: FALSE
- sense_overlapping: FALSE
- three_prime_overlapping_ncrna: FALSE
- TR_V_gene: FALSE
- TR_V_pseudogene: TRUE
- TR_D_gene: FALSE
- TR_J_gene: FALSE
- TR_C_gene: FALSE
- TR_J_pseudogene: TRUE
- IG_C_gene: FALSE
- IG_C_pseudogene: TRUE
- IG_J_gene: FALSE
- IG_J_pseudogene: TRUE
- IG_D_gene: FALSE
- IG_V_gene: FALSE
- IG_V_pseudogene: TRUE
Filter application: after normalization
Normalization algorithm: DESeq
Normalization arguments:
locfunc - [[list(locfunc = function (x, na.rm = FALSE)
standardGeneric("median"))locfunc
Statistical algorithm(s): DESeq
Statistical arguments for DESeq: method, sharingMode, fitType - method: blind
- sharingMode: fit-only
- fitType: local
Meta-analysis method: no meta-analysis, reported p-values from the first supplied statistical algorithm
Multiple testing correction: Benjamini-Hochberg FDR
p-value threshold: 0.05
Logarithmic tranformation offset: 1
Analysis preset: not available
Quality control plots: multidimensional scaling, biotype detection, biotype counts, sample and biotype saturation, filtered biotypes, correlation heatmap and correlogram, pairwise scatterplots between samples, boxplots, GC-content bias, transcript length bias, mean-difference plot, mean-variance plot, DEG biotype detection, volcano plot, DEG heatmap
Figure format: png, pdf
Output directory: /data/images/proton/run338/www/metaseqr_PHlab_run338
Output data: Annotation, p-value, Adjusted p-value (FDR), Fold change, Read counts
Output scale(s): log2 scale, Reads per Gene Model
Output values: Normalized values
Output statistics: Mean, Median, Standard deviation, Median Absolute Deviation (MAD), Coefficient of Variation, Robust Coefficient of Variation
Total run time: 36 minutes 24 seconds
Filtered genes
Number of filtered genes: 33388 which is the union of
- Filtered because of zero reads: 18538
-
Filtered because of exon filters: 0
-
Filtered because of gene filters: 14850
which is the union of
- length: 7912 genes with filter cutoff value 500
- avg.reads: 0 genes with filter cutoff value 0
- expression: 10474 genes further decomposed to (filter name, filtered genes, filter cutoff):
- median: 10474 genes with filter cutoff value 1
- biotype: 229 genes with filter cutoff value rRNA, TR_V_pseudogene, TR_J_pseudogene, IG_C_pseudogene, IG_J_pseudogene, IG_V_pseudogene
Differentially expressed genes
Number of differentially expressed genes per contrast:
- Ldc10Ctrl_vs_Ldc10Ig3: 890 (110) statistically significant genes of which 414 (76) up regulated, 253 (34) down regulated and 223 (0) not differentially expressed according to a p-value (FDR or adjusted p-value) threshold of 0.05 and an absolute fold change cutoff value of 1 in log2 scale.
- Ldc10Ctrl_vs_Ldc10Ig4: 1291 (105) statistically significant genes of which 580 (67) up regulated, 314 (38) down regulated and 397 (0) not differentially expressed according to a p-value (FDR or adjusted p-value) threshold of 0.05 and an absolute fold change cutoff value of 1 in log2 scale.
- Ldc10Ig3_vs_Ldc10Ig4: 588 (47) statistically significant genes of which 252 (15) up regulated, 167 (32) down regulated and 169 (0) not differentially expressed according to a p-value (FDR or adjusted p-value) threshold of 0.05 and an absolute fold change cutoff value of 1 in log2 scale.
- Con_vs_Dox: 139 (3) statistically significant genes of which 73 (3) up regulated, 44 (0) down regulated and 22 (0) not differentially expressed according to a p-value (FDR or adjusted p-value) threshold of 0.05 and an absolute fold change cutoff value of 1 in log2 scale.
Run log[ 2017-03-20 13:35:09 ] FATAL Condition names in sample list and contrast list do not match! Check if the contrasts follow the appropriate format (e.g. "_vs_" separating contrasting conditions... [ 2017-03-20 13:36:22 ] INFO 2017-03-20 13:36:22: Data processing started... [ 2017-03-20 13:36:22 ] INFO Read counts file: imported sam/bam/bed files [ 2017-03-20 13:36:22 ] INFO Conditions: Ldc10Ctrl, Ldc10Ig3, Ldc10Ig4, Con, Dox [ 2017-03-20 13:36:22 ] INFO Samples to include: PH3R16-Ldc10-Ctrl3, PH3R14-Ldc10-Ctrl1, PH3R15-Ldc10-Ctrl2, PH3R17-Ldc10-Ig3-1, PH3R18-Ldc10-Ig3-2, PH3R19-Ldc10-Ig3-3, PH3R20-Ldc10-Ig4-1, PH3R21-Ldc10-Ig4-2, PH3R22-Ldc10-Ig4-3, PH3R8-Con1, PH3R9-Con2, PH3R10-Con3, PH3R11-Dox1, PH3R12-Dox2, PH3R13-Dox3 [ 2017-03-20 13:36:22 ] INFO Samples to exclude: none [ 2017-03-20 13:36:22 ] INFO Requested contrasts: Ldc10Ctrl_vs_Ldc10Ig3, Ldc10Ctrl_vs_Ldc10Ig4, Ldc10Ig3_vs_Ldc10Ig4, Con_vs_Dox [ 2017-03-20 13:36:22 ] INFO Annotation: download [ 2017-03-20 13:36:22 ] INFO Organism: hg19 [ 2017-03-20 13:36:22 ] INFO Reference source: ensembl [ 2017-03-20 13:36:22 ] INFO Count type: utr [ 2017-03-20 13:36:22 ] INFO Exon filters: none applied [ 2017-03-20 13:36:22 ] INFO Gene filters: length, avg.reads, expression, biotype [ 2017-03-20 13:36:22 ] INFO length: [ 2017-03-20 13:36:22 ] INFO length: 500 [ 2017-03-20 13:36:22 ] INFO avg.reads: [ 2017-03-20 13:36:22 ] INFO average.per.bp: 100 [ 2017-03-20 13:36:22 ] INFO quantile: 0.25 [ 2017-03-20 13:36:22 ] INFO expression: [ 2017-03-20 13:36:22 ] INFO median: TRUE [ 2017-03-20 13:36:22 ] INFO mean: FALSE [ 2017-03-20 13:36:22 ] INFO quantile: NA [ 2017-03-20 13:36:22 ] INFO known: NA [ 2017-03-20 13:36:22 ] INFO custom: NA [ 2017-03-20 13:36:22 ] INFO biotype: [ 2017-03-20 13:36:22 ] INFO pseudogene: FALSE [ 2017-03-20 13:36:22 ] INFO lincRNA: FALSE [ 2017-03-20 13:36:22 ] INFO protein_coding: FALSE [ 2017-03-20 13:36:22 ] INFO antisense: FALSE [ 2017-03-20 13:36:22 ] INFO processed_transcript: FALSE [ 2017-03-20 13:36:22 ] INFO snRNA: FALSE [ 2017-03-20 13:36:22 ] INFO sense_intronic: FALSE [ 2017-03-20 13:36:22 ] INFO miRNA: FALSE [ 2017-03-20 13:36:22 ] INFO misc_RNA: FALSE [ 2017-03-20 13:36:22 ] INFO snoRNA: FALSE [ 2017-03-20 13:36:22 ] INFO rRNA: TRUE [ 2017-03-20 13:36:22 ] INFO polymorphic_pseudogene: FALSE [ 2017-03-20 13:36:22 ] INFO sense_overlapping: FALSE [ 2017-03-20 13:36:22 ] INFO three_prime_overlapping_ncrna: FALSE [ 2017-03-20 13:36:22 ] INFO TR_V_gene: FALSE [ 2017-03-20 13:36:22 ] INFO TR_V_pseudogene: TRUE [ 2017-03-20 13:36:22 ] INFO TR_D_gene: FALSE [ 2017-03-20 13:36:22 ] INFO TR_J_gene: FALSE [ 2017-03-20 13:36:22 ] INFO TR_C_gene: FALSE [ 2017-03-20 13:36:22 ] INFO TR_J_pseudogene: TRUE [ 2017-03-20 13:36:22 ] INFO IG_C_gene: FALSE [ 2017-03-20 13:36:22 ] INFO IG_C_pseudogene: TRUE [ 2017-03-20 13:36:22 ] INFO IG_J_gene: FALSE [ 2017-03-20 13:36:22 ] INFO IG_J_pseudogene: TRUE [ 2017-03-20 13:36:22 ] INFO IG_D_gene: FALSE [ 2017-03-20 13:36:22 ] INFO IG_V_gene: FALSE [ 2017-03-20 13:36:22 ] INFO IG_V_pseudogene: TRUE [ 2017-03-20 13:36:22 ] INFO Filter application: postnorm [ 2017-03-20 13:36:22 ] INFO Normalization algorithm: deseq [ 2017-03-20 13:36:22 ] INFO Normalization arguments: [ 2017-03-20 13:36:22 ] INFO locfunc: [ 2017-03-20 13:36:22 ] INFO [[ [ 2017-03-20 13:36:22 ] INFO list(locfunc = function (x, na.rm = FALSE) standardGeneric("median")) [ 2017-03-20 13:36:22 ] INFO locfunc [ 2017-03-20 13:36:22 ] INFO Statistical algorithm: deseq [ 2017-03-20 13:36:22 ] INFO Statistical arguments: [ 2017-03-20 13:36:22 ] INFO deseq: blind, fit-only, local [ 2017-03-20 13:36:22 ] INFO Meta-analysis method: none [ 2017-03-20 13:36:22 ] INFO Multiple testing correction: BH [ 2017-03-20 13:36:22 ] INFO p-value threshold: 0.05 [ 2017-03-20 13:36:22 ] INFO Logarithmic transformation offset: 1 [ 2017-03-20 13:36:22 ] INFO Quality control plots: mds, biodetection, countsbio, saturation, readnoise, filtered, correl, pairwise, boxplot, gcbias, lengthbias, meandiff, meanvar, biodist, volcano, deheatmap [ 2017-03-20 13:36:22 ] INFO Figure format: png, pdf [ 2017-03-20 13:36:22 ] INFO Output directory: /data/images/proton/run338/www/metaseqr_PHlab_run338 [ 2017-03-20 13:36:22 ] INFO Output data: annotation, p.value, adj.p.value, fold.change, counts, flags [ 2017-03-20 13:36:22 ] INFO Output scale(s): log2, rpgm [ 2017-03-20 13:36:22 ] INFO Output values: normalized [ 2017-03-20 13:36:22 ] INFO Downloading gene annotation for hg19... [ 2017-03-20 13:36:33 ] INFO Downloading transcript annotation for hg19... [ 2017-03-20 13:39:57 ] INFO Converting annotation to GenomicRanges object... [ 2017-03-20 13:39:57 ] INFO Merging transcript 3' UTRs to create unique gene/transcript models... [ 2017-03-20 13:45:17 ] INFO Flanking merged transcript 3' UTRs per 500bp... [ 2017-03-20 13:45:22 ] INFO Reading bam file PH3R16-Ldc10-Ctrl3.bam for sample with name PH3R16-Ldc10-Ctrl3. This might take some time... [ 2017-03-20 13:45:22 ] WARN Information regarding strandedness of the reads is not correctly provided! Assuming unstranded... [ 2017-03-20 13:45:22 ] INFO Reading bam file PH3R14-Ldc10-Ctrl1.bam for sample with name PH3R14-Ldc10-Ctrl1. This might take some time... [ 2017-03-20 13:45:22 ] WARN Information regarding strandedness of the reads is not correctly provided! Assuming unstranded... [ 2017-03-20 13:45:22 ] INFO Reading bam file PH3R15-Ldc10-Ctrl2.bam for sample with name PH3R15-Ldc10-Ctrl2. This might take some time... [ 2017-03-20 13:45:22 ] WARN Information regarding strandedness of the reads is not correctly provided! Assuming unstranded... [ 2017-03-20 13:45:22 ] INFO Reading bam file PH3R17-Ldc10-Ig3-1.bam for sample with name PH3R17-Ldc10-Ig3-1. This might take some time... [ 2017-03-20 13:45:22 ] WARN Information regarding strandedness of the reads is not correctly provided! Assuming unstranded... [ 2017-03-20 13:45:22 ] INFO Reading bam file PH3R18-Ldc10-Ig3-2.bam for sample with name PH3R18-Ldc10-Ig3-2. This might take some time... [ 2017-03-20 13:45:22 ] WARN Information regarding strandedness of the reads is not correctly provided! Assuming unstranded... [ 2017-03-20 13:45:22 ] INFO Reading bam file PH3R19-Ldc10-Ig3-3.bam for sample with name PH3R19-Ldc10-Ig3-3. This might take some time... [ 2017-03-20 13:45:22 ] WARN Information regarding strandedness of the reads is not correctly provided! Assuming unstranded... [ 2017-03-20 13:45:22 ] INFO Reading bam file PH3R20-Ldc10-Ig4-1.bam for sample with name PH3R20-Ldc10-Ig4-1. This might take some time... [ 2017-03-20 13:45:22 ] WARN Information regarding strandedness of the reads is not correctly provided! Assuming unstranded... [ 2017-03-20 13:45:22 ] INFO Reading bam file PH3R21-Ldc10-Ig4-2.bam for sample with name PH3R21-Ldc10-Ig4-2. This might take some time... [ 2017-03-20 13:45:22 ] WARN Information regarding strandedness of the reads is not correctly provided! Assuming unstranded... [ 2017-03-20 13:45:22 ] INFO Reading bam file PH3R22-Ldc10-Ig4-3.bam for sample with name PH3R22-Ldc10-Ig4-3. This might take some time... [ 2017-03-20 13:45:22 ] WARN Information regarding strandedness of the reads is not correctly provided! Assuming unstranded... [ 2017-03-20 13:45:22 ] INFO Reading bam file PH3R8-Con1.bam for sample with name PH3R8-Con1. This might take some time... [ 2017-03-20 13:45:22 ] WARN Information regarding strandedness of the reads is not correctly provided! Assuming unstranded... [ 2017-03-20 13:45:22 ] INFO Reading bam file PH3R9-Con2.bam for sample with name PH3R9-Con2. This might take some time... [ 2017-03-20 13:45:22 ] WARN Information regarding strandedness of the reads is not correctly provided! Assuming unstranded... [ 2017-03-20 13:45:22 ] INFO Reading bam file PH3R10-Con3.bam for sample with name PH3R10-Con3. This might take some time... [ 2017-03-20 13:45:22 ] WARN Information regarding strandedness of the reads is not correctly provided! Assuming unstranded... [ 2017-03-20 13:45:22 ] INFO Reading bam file PH3R11-Dox1.bam for sample with name PH3R11-Dox1. This might take some time... [ 2017-03-20 13:45:22 ] WARN Information regarding strandedness of the reads is not correctly provided! Assuming unstranded... [ 2017-03-20 13:45:22 ] INFO Reading bam file PH3R12-Dox2.bam for sample with name PH3R12-Dox2. This might take some time... [ 2017-03-20 13:45:22 ] WARN Information regarding strandedness of the reads is not correctly provided! Assuming unstranded... [ 2017-03-20 13:45:22 ] INFO Reading bam file PH3R13-Dox3.bam for sample with name PH3R13-Dox3. This might take some time... [ 2017-03-20 13:45:22 ] WARN Information regarding strandedness of the reads is not correctly provided! Assuming unstranded... [ 2017-03-20 13:45:28 ] INFO Counting reads overlapping with given annotation... [ 2017-03-20 13:45:28 ] INFO ...for single-end reads... [ 2017-03-20 13:45:28 ] INFO ...ignoring strandedness... [ 2017-03-20 13:45:29 ] INFO Counting reads overlapping with given annotation... [ 2017-03-20 13:45:29 ] INFO ...for single-end reads... [ 2017-03-20 13:45:29 ] INFO ...ignoring strandedness... [ 2017-03-20 13:45:29 ] INFO Counting reads overlapping with given annotation... [ 2017-03-20 13:45:29 ] INFO ...for single-end reads... [ 2017-03-20 13:45:29 ] INFO ...ignoring strandedness... [ 2017-03-20 13:45:30 ] INFO Counting reads overlapping with given annotation... [ 2017-03-20 13:45:30 ] INFO ...for single-end reads... [ 2017-03-20 13:45:30 ] INFO ...ignoring strandedness... [ 2017-03-20 13:45:30 ] INFO Counting reads overlapping with given annotation... [ 2017-03-20 13:45:30 ] INFO ...for single-end reads... [ 2017-03-20 13:45:30 ] INFO ...ignoring strandedness... [ 2017-03-20 13:45:31 ] INFO Counting reads overlapping with given annotation... [ 2017-03-20 13:45:31 ] INFO ...for single-end reads... [ 2017-03-20 13:45:31 ] INFO ...ignoring strandedness... [ 2017-03-20 13:45:31 ] INFO Counting reads overlapping with given annotation... [ 2017-03-20 13:45:31 ] INFO ...for single-end reads... [ 2017-03-20 13:45:31 ] INFO ...ignoring strandedness... [ 2017-03-20 13:45:31 ] INFO Counting reads overlapping with given annotation... [ 2017-03-20 13:45:31 ] INFO ...for single-end reads... [ 2017-03-20 13:45:31 ] INFO ...ignoring strandedness... [ 2017-03-20 13:45:31 ] INFO Counting reads overlapping with given annotation... [ 2017-03-20 13:45:31 ] INFO ...for single-end reads... [ 2017-03-20 13:45:31 ] INFO ...ignoring strandedness... [ 2017-03-20 13:45:31 ] INFO Counting reads overlapping with given annotation... [ 2017-03-20 13:45:31 ] INFO ...for single-end reads... [ 2017-03-20 13:45:31 ] INFO ...ignoring strandedness... [ 2017-03-20 13:45:31 ] INFO Counting reads overlapping with given annotation... [ 2017-03-20 13:45:31 ] INFO ...for single-end reads... [ 2017-03-20 13:45:31 ] INFO ...ignoring strandedness... [ 2017-03-20 13:45:32 ] INFO Counting reads overlapping with given annotation... [ 2017-03-20 13:45:32 ] INFO ...for single-end reads... [ 2017-03-20 13:45:32 ] INFO ...ignoring strandedness... [ 2017-03-20 13:45:32 ] INFO Counting reads overlapping with given annotation... [ 2017-03-20 13:45:32 ] INFO ...for single-end reads... [ 2017-03-20 13:45:32 ] INFO ...ignoring strandedness... [ 2017-03-20 13:45:32 ] INFO Counting reads overlapping with given annotation... [ 2017-03-20 13:45:32 ] INFO ...for single-end reads... [ 2017-03-20 13:45:32 ] INFO ...ignoring strandedness... [ 2017-03-20 13:45:35 ] INFO Counting reads overlapping with given annotation... [ 2017-03-20 13:45:35 ] INFO ...for single-end reads... [ 2017-03-20 13:45:35 ] INFO ...ignoring strandedness... [ 2017-03-20 13:46:20 ] INFO Exporting raw read counts table to /data/images/proton/run338/www/metaseqr_PHlab_run338/lists/raw_counts_table.txt.gz [ 2017-03-20 13:46:25 ] INFO Checking chromosomes in transcript counts and gene annotation... [ 2017-03-20 13:46:25 ] INFO Processing transcripts... [ 2017-03-20 13:46:25 ] INFO Separating transcripts (UTR regions) per gene for PH3R16-Ldc10-Ctrl3... [ 2017-03-20 13:47:01 ] INFO Separating transcripts (UTR regions) per gene for PH3R14-Ldc10-Ctrl1... [ 2017-03-20 13:47:38 ] INFO Separating transcripts (UTR regions) per gene for PH3R15-Ldc10-Ctrl2... [ 2017-03-20 13:48:15 ] INFO Separating transcripts (UTR regions) per gene for PH3R17-Ldc10-Ig3-1... [ 2017-03-20 13:48:52 ] INFO Separating transcripts (UTR regions) per gene for PH3R18-Ldc10-Ig3-2... [ 2017-03-20 13:49:22 ] INFO Separating transcripts (UTR regions) per gene for PH3R19-Ldc10-Ig3-3... [ 2017-03-20 13:49:53 ] INFO Separating transcripts (UTR regions) per gene for PH3R20-Ldc10-Ig4-1... [ 2017-03-20 13:50:24 ] INFO Separating transcripts (UTR regions) per gene for PH3R21-Ldc10-Ig4-2... [ 2017-03-20 13:50:57 ] INFO Separating transcripts (UTR regions) per gene for PH3R22-Ldc10-Ig4-3... [ 2017-03-20 13:51:29 ] INFO Separating transcripts (UTR regions) per gene for PH3R8-Con1... [ 2017-03-20 13:52:03 ] INFO Separating transcripts (UTR regions) per gene for PH3R9-Con2... [ 2017-03-20 13:52:36 ] INFO Separating transcripts (UTR regions) per gene for PH3R10-Con3... [ 2017-03-20 13:53:11 ] INFO Separating transcripts (UTR regions) per gene for PH3R11-Dox1... [ 2017-03-20 13:53:45 ] INFO Separating transcripts (UTR regions) per gene for PH3R12-Dox2... [ 2017-03-20 13:54:21 ] INFO Separating transcripts (UTR regions) per gene for PH3R13-Dox3... [ 2017-03-20 13:54:58 ] INFO Saving gene model to /data/images/proton/run338/www/metaseqr_PHlab_run338/data/gene_model.RData [ 2017-03-20 13:55:03 ] INFO Summarizing count data... [ 2017-03-20 13:55:19 ] INFO Removing genes with zero counts in all samples... [ 2017-03-20 13:55:20 ] INFO Normalizing with: deseq [ 2017-03-20 13:55:20 ] INFO Applying gene filter length... [ 2017-03-20 13:55:20 ] INFO Threshold below which ignored: 500 [ 2017-03-20 13:55:20 ] INFO Applying gene filter avg.reads... [ 2017-03-20 13:55:20 ] INFO Threshold below which ignored: 0 [ 2017-03-20 13:55:20 ] INFO Applying gene filter expression... [ 2017-03-20 13:55:21 ] INFO Threshold below which ignored: 1 [ 2017-03-20 13:55:21 ] INFO Applying gene filter biotype... [ 2017-03-20 13:55:21 ] INFO Biotypes ignored: rRNA, TR_V_pseudogene, TR_J_pseudogene, IG_C_pseudogene, IG_J_pseudogene, IG_V_pseudogene [ 2017-03-20 13:55:21 ] INFO 33388 genes filtered out [ 2017-03-20 13:55:21 ] INFO 24348 genes remain after filtering [ 2017-03-20 13:55:21 ] INFO Running statistical tests with: deseq [ 2017-03-20 13:55:21 ] INFO Contrast: Ldc10Ctrl_vs_Ldc10Ig3 [ 2017-03-20 13:55:34 ] INFO Contrast: Ldc10Ctrl_vs_Ldc10Ig4 [ 2017-03-20 13:55:47 ] INFO Contrast: Ldc10Ig3_vs_Ldc10Ig4 [ 2017-03-20 13:55:59 ] INFO Contrast: Con_vs_Dox [ 2017-03-20 13:56:10 ] INFO Contrast Ldc10Ctrl_vs_Ldc10Ig3: found 890 genes [ 2017-03-20 13:56:10 ] INFO Contrast Ldc10Ctrl_vs_Ldc10Ig4: found 1291 genes [ 2017-03-20 13:56:10 ] INFO Contrast Ldc10Ig3_vs_Ldc10Ig4: found 588 genes [ 2017-03-20 13:56:10 ] INFO Contrast Con_vs_Dox: found 139 genes [ 2017-03-20 13:56:11 ] INFO Exporting and compressing normalized read counts table to /data/images/proton/run338/www/metaseqr_PHlab_run338/lists/normalized_counts_table.txt [ 2017-03-20 13:56:12 ] INFO Building output files... [ 2017-03-20 13:56:14 ] INFO Contrast: Ldc10Ctrl_vs_Ldc10Ig3 [ 2017-03-20 13:56:14 ] INFO Adding non-filtered data... [ 2017-03-20 13:56:14 ] INFO binding annotation... [ 2017-03-20 13:56:15 ] INFO binding p-values... [ 2017-03-20 13:56:15 ] INFO binding FDRs... [ 2017-03-20 13:56:16 ] INFO binding log2 normalized fold changes... [ 2017-03-20 13:56:17 ] INFO binding all normalized counts for Ldc10Ctrl... [ 2017-03-20 13:56:18 ] INFO binding all normalized counts for Ldc10Ig3... [ 2017-03-20 13:56:19 ] INFO binding filtering flags... [ 2017-03-20 13:56:20 ] INFO Writing output... [ 2017-03-20 13:56:20 ] INFO Adding filtered data... [ 2017-03-20 13:56:20 ] INFO binding annotation... [ 2017-03-20 13:56:20 ] INFO binding p-values... [ 2017-03-20 13:56:20 ] INFO binding FDRs... [ 2017-03-20 13:56:20 ] INFO binding log2 normalized fold changes... [ 2017-03-20 13:56:20 ] INFO binding all normalized counts for Ldc10Ctrl... [ 2017-03-20 13:56:20 ] INFO binding all normalized counts for Ldc10Ig3... [ 2017-03-20 13:56:20 ] INFO binding filtering flags... [ 2017-03-20 13:56:22 ] INFO Writing output... [ 2017-03-20 13:56:24 ] INFO Contrast: Ldc10Ctrl_vs_Ldc10Ig4 [ 2017-03-20 13:56:24 ] INFO Adding non-filtered data... [ 2017-03-20 13:56:24 ] INFO binding annotation... [ 2017-03-20 13:56:25 ] INFO binding p-values... [ 2017-03-20 13:56:25 ] INFO binding FDRs... [ 2017-03-20 13:56:25 ] INFO binding log2 normalized fold changes... [ 2017-03-20 13:56:27 ] INFO binding all normalized counts for Ldc10Ctrl... [ 2017-03-20 13:56:27 ] INFO binding all normalized counts for Ldc10Ig4... [ 2017-03-20 13:56:28 ] INFO binding filtering flags... [ 2017-03-20 13:56:29 ] INFO Writing output... [ 2017-03-20 13:56:29 ] INFO Adding filtered data... [ 2017-03-20 13:56:29 ] INFO binding annotation... [ 2017-03-20 13:56:29 ] INFO binding p-values... [ 2017-03-20 13:56:29 ] INFO binding FDRs... [ 2017-03-20 13:56:30 ] INFO binding log2 normalized fold changes... [ 2017-03-20 13:56:30 ] INFO binding all normalized counts for Ldc10Ctrl... [ 2017-03-20 13:56:30 ] INFO binding all normalized counts for Ldc10Ig4... [ 2017-03-20 13:56:30 ] INFO binding filtering flags... [ 2017-03-20 13:56:31 ] INFO Writing output... [ 2017-03-20 13:56:33 ] INFO Contrast: Ldc10Ig3_vs_Ldc10Ig4 [ 2017-03-20 13:56:33 ] INFO Adding non-filtered data... [ 2017-03-20 13:56:33 ] INFO binding annotation... [ 2017-03-20 13:56:34 ] INFO binding p-values... [ 2017-03-20 13:56:34 ] INFO binding FDRs... [ 2017-03-20 13:56:35 ] INFO binding log2 normalized fold changes... [ 2017-03-20 13:56:35 ] INFO binding all normalized counts for Ldc10Ig3... [ 2017-03-20 13:56:36 ] INFO binding all normalized counts for Ldc10Ig4... [ 2017-03-20 13:56:37 ] INFO binding filtering flags... [ 2017-03-20 13:56:38 ] INFO Writing output... [ 2017-03-20 13:56:38 ] INFO Adding filtered data... [ 2017-03-20 13:56:38 ] INFO binding annotation... [ 2017-03-20 13:56:38 ] INFO binding p-values... [ 2017-03-20 13:56:38 ] INFO binding FDRs... [ 2017-03-20 13:56:39 ] INFO binding log2 normalized fold changes... [ 2017-03-20 13:56:39 ] INFO binding all normalized counts for Ldc10Ig3... [ 2017-03-20 13:56:39 ] INFO binding all normalized counts for Ldc10Ig4... [ 2017-03-20 13:56:39 ] INFO binding filtering flags... [ 2017-03-20 13:56:40 ] INFO Writing output... [ 2017-03-20 13:56:42 ] INFO Contrast: Con_vs_Dox [ 2017-03-20 13:56:42 ] INFO Adding non-filtered data... [ 2017-03-20 13:56:42 ] INFO binding annotation... [ 2017-03-20 13:56:43 ] INFO binding p-values... [ 2017-03-20 13:56:43 ] INFO binding FDRs... [ 2017-03-20 13:56:44 ] INFO binding log2 normalized fold changes... [ 2017-03-20 13:56:44 ] INFO binding all normalized counts for Con... [ 2017-03-20 13:56:45 ] INFO binding all normalized counts for Dox... [ 2017-03-20 13:56:46 ] INFO binding filtering flags... [ 2017-03-20 13:56:47 ] INFO Writing output... [ 2017-03-20 13:56:47 ] INFO Adding filtered data... [ 2017-03-20 13:56:47 ] INFO binding annotation... [ 2017-03-20 13:56:47 ] INFO binding p-values... [ 2017-03-20 13:56:47 ] INFO binding FDRs... [ 2017-03-20 13:56:48 ] INFO binding log2 normalized fold changes... [ 2017-03-20 13:56:48 ] INFO binding all normalized counts for Con... [ 2017-03-20 13:56:48 ] INFO binding all normalized counts for Dox... [ 2017-03-20 13:56:48 ] INFO binding filtering flags... [ 2017-03-20 13:56:49 ] INFO Writing output... [ 2017-03-20 13:56:51 ] INFO Creating quality control graphs... [ 2017-03-20 13:56:51 ] INFO Plotting in png format... [ 2017-03-20 13:56:51 ] INFO Plotting mds... [ 2017-03-20 13:56:51 ] INFO Plotting biodetection... [ 2017-03-20 13:56:54 ] INFO Plotting countsbio... [ 2017-03-20 13:56:57 ] INFO Plotting saturation... [ 2017-03-20 13:57:13 ] INFO Plotting readnoise... [ 2017-03-20 13:57:20 ] INFO Plotting correl... [ 2017-03-20 13:57:21 ] INFO Plotting pairwise... [ 2017-03-20 13:59:14 ] INFO Plotting boxplot... [ 2017-03-20 13:59:14 ] INFO Plotting gcbias... [ 2017-03-20 13:59:16 ] INFO Plotting lengthbias... [ 2017-03-20 13:59:19 ] INFO Plotting meandiff... [ 2017-03-20 13:59:22 ] INFO Plotting meanvar... [ 2017-03-20 13:59:47 ] INFO Plotting boxplot... [ 2017-03-20 13:59:47 ] INFO Plotting gcbias... [ 2017-03-20 13:59:49 ] INFO Plotting lengthbias... [ 2017-03-20 13:59:52 ] INFO Plotting meandiff... [ 2017-03-20 13:59:55 ] INFO Plotting meanvar... [ 2017-03-20 14:00:21 ] INFO Plotting biodist... [ 2017-03-20 14:00:21 ] INFO Contrast: Ldc10Ctrl_vs_Ldc10Ig3 [ 2017-03-20 14:00:22 ] INFO Contrast: Ldc10Ctrl_vs_Ldc10Ig4 [ 2017-03-20 14:00:22 ] INFO Contrast: Ldc10Ig3_vs_Ldc10Ig4 [ 2017-03-20 14:00:22 ] INFO Contrast: Con_vs_Dox [ 2017-03-20 14:00:23 ] INFO Plotting volcano... [ 2017-03-20 14:00:23 ] INFO Contrast: Ldc10Ctrl_vs_Ldc10Ig3 [ 2017-03-20 14:00:23 ] INFO Contrast: Ldc10Ctrl_vs_Ldc10Ig4 [ 2017-03-20 14:00:24 ] INFO Contrast: Ldc10Ig3_vs_Ldc10Ig4 [ 2017-03-20 14:00:25 ] INFO Contrast: Con_vs_Dox [ 2017-03-20 14:00:26 ] INFO Plotting deheatmap... [ 2017-03-20 14:00:26 ] INFO Contrast: Ldc10Ctrl_vs_Ldc10Ig3 [ 2017-03-20 14:01:42 ] INFO Contrast: Ldc10Ctrl_vs_Ldc10Ig4 [ 2017-03-20 14:02:52 ] INFO Contrast: Ldc10Ig3_vs_Ldc10Ig4 [ 2017-03-20 14:04:02 ] INFO Contrast: Con_vs_Dox [ 2017-03-20 14:05:13 ] INFO Plotting filtered... [ 2017-03-20 14:05:13 ] INFO Plotting in pdf format... [ 2017-03-20 14:05:13 ] INFO Plotting mds... [ 2017-03-20 14:05:13 ] INFO Plotting biodetection... [ 2017-03-20 14:05:15 ] INFO Plotting countsbio... [ 2017-03-20 14:05:17 ] INFO Plotting saturation... [ 2017-03-20 14:05:29 ] INFO Plotting readnoise... [ 2017-03-20 14:05:37 ] INFO Plotting correl... [ 2017-03-20 14:05:37 ] INFO Plotting pairwise... [ 2017-03-20 14:06:36 ] INFO Plotting boxplot... [ 2017-03-20 14:06:36 ] INFO Plotting gcbias... [ 2017-03-20 14:06:39 ] INFO Plotting lengthbias... [ 2017-03-20 14:06:42 ] INFO Plotting meandiff... [ 2017-03-20 14:06:45 ] INFO Plotting meanvar... [ 2017-03-20 14:07:14 ] INFO Plotting boxplot... [ 2017-03-20 14:07:14 ] INFO Plotting gcbias... [ 2017-03-20 14:07:17 ] INFO Plotting lengthbias... [ 2017-03-20 14:07:20 ] INFO Plotting meandiff... [ 2017-03-20 14:07:24 ] INFO Plotting meanvar... [ 2017-03-20 14:07:52 ] INFO Plotting biodist... [ 2017-03-20 14:07:52 ] INFO Contrast: Ldc10Ctrl_vs_Ldc10Ig3 [ 2017-03-20 14:07:52 ] INFO Contrast: Ldc10Ctrl_vs_Ldc10Ig4 [ 2017-03-20 14:07:52 ] INFO Contrast: Ldc10Ig3_vs_Ldc10Ig4 [ 2017-03-20 14:07:52 ] INFO Contrast: Con_vs_Dox [ 2017-03-20 14:07:53 ] INFO Plotting volcano... [ 2017-03-20 14:07:53 ] INFO Contrast: Ldc10Ctrl_vs_Ldc10Ig3 [ 2017-03-20 14:07:53 ] INFO Contrast: Ldc10Ctrl_vs_Ldc10Ig4 [ 2017-03-20 14:07:54 ] INFO Contrast: Ldc10Ig3_vs_Ldc10Ig4 [ 2017-03-20 14:07:54 ] INFO Contrast: Con_vs_Dox [ 2017-03-20 14:07:54 ] INFO Plotting deheatmap... [ 2017-03-20 14:07:54 ] INFO Contrast: Ldc10Ctrl_vs_Ldc10Ig3 [ 2017-03-20 14:09:09 ] INFO Contrast: Ldc10Ctrl_vs_Ldc10Ig4 [ 2017-03-20 14:10:20 ] INFO Contrast: Ldc10Ig3_vs_Ldc10Ig4 [ 2017-03-20 14:11:32 ] INFO Contrast: Con_vs_Dox [ 2017-03-20 14:12:45 ] INFO Plotting filtered... [ 2017-03-20 14:12:45 ] INFO Creating HTML report... [ 2017-03-20 14:12:45 ] INFO Compressing figures...
Multidimensional scaling
Biotype detection
Biotype detection counts
Read and biotype saturation
RNA-Seq reads noise
Correlation plots
Pairwise scatterplots
Boxplots
GC content bias
Gene/transcript length bias
Mean-difference
Mean-variance
Chromosome and biotype distribution of filtered genes
Volcano plots
DEG heatmaps
Chromosome and biotype distributions of DEGs
Results
DEG table for the contrast Ldc10Ctrl_vs_Ldc10Ig3The following table presents the top 5% statistically significant genes (use the download links below the table to retrieve the whole list) for the contrast Ldc10Ctrl_vs_Ldc10Ig3. The fields of the table correspond to the requested features to be exported. The table can be searched using the search field on the top right. | chromosome | start | end | gene_id | gc_content | strand | gene_name | biotype | p-value_deseq | FDR_deseq | log2_normalized_fold_change_Ldc10Ctrl_vs_Ldc10Ig3 | log2_normalized_counts_PH3R16-Ldc10-Ctrl3 | log2_normalized_counts_PH3R14-Ldc10-Ctrl1 | log2_normalized_counts_PH3R15-Ldc10-Ctrl2 | rpgm_normalized_counts_PH3R16-Ldc10-Ctrl3 | rpgm_normalized_counts_PH3R14-Ldc10-Ctrl1 | rpgm_normalized_counts_PH3R15-Ldc10-Ctrl2 | log2_normalized_counts_PH3R17-Ldc10-Ig3-1 | log2_normalized_counts_PH3R18-Ldc10-Ig3-2 | log2_normalized_counts_PH3R19-Ldc10-Ig3-3 | rpgm_normalized_counts_PH3R17-Ldc10-Ig3-1 | rpgm_normalized_counts_PH3R18-Ldc10-Ig3-2 | rpgm_normalized_counts_PH3R19-Ldc10-Ig3-3 | LN | AR | MD | MN | QN | KN | CM | BT |
|---|
| chr2 | 27476552 | 27498685 | ENSG00000115194 | 0.5210 | - | SLC30A3 | protein_coding | 6.30e-60 | 1.53e-55 | 8.574458 | 1.58e+00 | 2.00e+00 | 2.81e+00 | 2.82e-04 | 4.23e-04 | 8.46e-04 | 1.08e+01 | 1.06e+01 | 1.10e+01 | 2.49e-01 | 2.24e-01 | 2.80e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 159931008 | 159948851 | ENSG00000224259 | 0.4525 | + | LINC01133 | lincRNA | 6.19e-38 | 7.54e-34 | 6.519374 | 2.32e+00 | 2.81e+00 | 1.58e+00 | 1.67e-03 | 2.51e-03 | 8.36e-04 | 9.06e+00 | 8.82e+00 | 8.62e+00 | 2.22e-01 | 1.88e-01 | 1.64e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr12 | 52817854 | 52828309 | ENSG00000170454 | 0.4945 | - | KRT75 | protein_coding | 5.42e-28 | 4.40e-24 | -4.457211 | 1.06e+01 | 1.11e+01 | 1.10e+01 | 9.41e-01 | 1.36e+00 | 1.26e+00 | 6.69e+00 | 6.54e+00 | 6.13e+00 | 6.21e-02 | 5.60e-02 | 4.20e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr20 | 21106624 | 21227260 | ENSG00000088970 | 0.4117 | + | PLK1S1 | processed_transcript | 4.64e-26 | 2.83e-22 | 4.846883 | 5.00e+00 | 3.46e+00 | 4.32e+00 | 6.47e-03 | 2.09e-03 | 3.97e-03 | 9.34e+00 | 9.38e+00 | 8.96e+00 | 1.35e-01 | 1.39e-01 | 1.04e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr10 | 76854192 | 76868979 | ENSG00000079393 | 0.5486 | - | DUSP13 | protein_coding | 2.56e-19 | 1.25e-15 | 5.271887 | 2.00e+00 | 1.58e+00 | 2.00e+00 | 3.40e-04 | 2.26e-04 | 3.40e-04 | 6.99e+00 | 7.11e+00 | 7.32e+00 | 1.43e-02 | 1.55e-02 | 1.80e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr6 | 31582961 | 31584798 | ENSG00000204472 | 0.5397 | + | AIF1 | protein_coding | 5.13e-19 | 2.08e-15 | 6.695808 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 6.63e+00 | 6.99e+00 | 6.41e+00 | 3.90e-02 | 5.01e-02 | 3.34e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr14 | 94571182 | 94583033 | ENSG00000165949 | 0.4867 | + | IFI27 | protein_coding | 4.52e-18 | 1.57e-14 | 3.624491 | 4.25e+00 | 4.91e+00 | 4.52e+00 | 2.85e-03 | 4.59e-03 | 3.48e-03 | 8.20e+00 | 8.59e+00 | 7.70e+00 | 4.63e-02 | 6.09e-02 | 3.27e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 63340667 | 63384355 | ENSG00000176485 | 0.4584 | - | PLA2G16 | protein_coding | 2.85e-17 | 8.69e-14 | 3.657531 | 4.00e+00 | 3.81e+00 | 3.58e+00 | 3.55e-03 | 3.08e-03 | 2.60e-03 | 7.20e+00 | 7.44e+00 | 7.71e+00 | 3.45e-02 | 4.09e-02 | 4.92e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr10 | 54074056 | 54077802 | ENSG00000107984 | 0.4326 | + | DKK1 | protein_coding | 1.08e-15 | 2.92e-12 | 4.631656 | 2.58e+00 | 1.58e+00 | 3.32e+00 | 1.13e-03 | 4.51e-04 | 2.03e-03 | 7.45e+00 | 7.10e+00 | 7.31e+00 | 3.92e-02 | 3.06e-02 | 3.56e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr3 | 26664297 | 26752267 | ENSG00000179796 | 0.3951 | + | LRRC3B | protein_coding | 5.19e-15 | 1.26e-11 | 6.163230 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 6.21e+00 | 6.21e+00 | 6.07e+00 | 1.43e-02 | 1.43e-02 | 1.29e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr19 | 46646363 | 46664556 | ENSG00000204866 | 0.4054 | + | IGFL2 | protein_coding | 2.98e-13 | 6.60e-10 | 3.702904 | 3.91e+00 | 3.58e+00 | 4.17e+00 | 9.95e-03 | 7.82e-03 | 1.21e-02 | 7.71e+00 | 7.48e+00 | 7.63e+00 | 1.48e-01 | 1.27e-01 | 1.40e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr14 | 106383838 | 106391825 | ENSG00000226777 | 0.5600 | + | KIAA0125 | protein_coding | 3.94e-12 | 8.00e-09 | 5.672425 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 6.13e+00 | 5.58e+00 | 5.13e+00 | 2.85e-02 | 1.94e-02 | 1.40e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr15 | 74471807 | 74504608 | ENSG00000137868 | 0.5521 | - | STRA6 | protein_coding | 4.56e-12 | 8.54e-09 | 3.900242 | 3.46e+00 | 3.00e+00 | 3.32e+00 | 7.63e-04 | 5.34e-04 | 6.87e-04 | 7.54e+00 | 6.98e+00 | 6.92e+00 | 1.41e-02 | 9.54e-03 | 9.16e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 110841447 | 110874143 | ENSG00000144063 | 0.4733 | - | MALL | protein_coding | 1.63e-10 | 2.83e-07 | 3.084195 | 3.46e+00 | 4.25e+00 | 4.46e+00 | 1.91e-03 | 3.45e-03 | 4.02e-03 | 7.28e+00 | 7.21e+00 | 7.11e+00 | 2.95e-02 | 2.81e-02 | 2.62e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr9 | 33441152 | 33447609 | ENSG00000165272 | 0.5565 | - | AQP3 | protein_coding | 1.97e-10 | 3.20e-07 | 2.345505 | 9.14e+00 | 9.77e+00 | 9.37e+00 | 1.68e-01 | 2.60e-01 | 1.97e-01 | 1.17e+01 | 1.17e+01 | 1.20e+01 | 9.60e-01 | 1.01e+00 | 1.21e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 220299568 | 220363009 | ENSG00000072195 | 0.5768 | + | SPEG | protein_coding | 2.56e-10 | 3.89e-07 | 4.727920 | 1.00e+00 | 1.00e+00 | 1.00e+00 | 5.69e-05 | 5.69e-05 | 5.69e-05 | 5.43e+00 | 5.73e+00 | 5.98e+00 | 2.39e-03 | 2.96e-03 | 3.53e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr13 | 53602894 | 53626192 | ENSG00000102837 | 0.4009 | + | OLFM4 | protein_coding | 2.78e-10 | 3.96e-07 | -3.495855 | 7.21e+00 | 6.97e+00 | 6.46e+00 | 5.92e-02 | 5.00e-02 | 3.51e-02 | 3.58e+00 | 2.81e+00 | 3.70e+00 | 4.43e-03 | 2.42e-03 | 4.83e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 235401685 | 235405697 | ENSG00000188042 | 0.5016 | - | ARL4C | protein_coding | 2.93e-10 | 3.96e-07 | 2.422720 | 5.43e+00 | 6.49e+00 | 6.04e+00 | 1.01e-02 | 2.14e-02 | 1.56e-02 | 8.48e+00 | 8.43e+00 | 8.51e+00 | 8.58e-02 | 8.26e-02 | 8.72e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr7 | 142977050 | 142985141 | ENSG00000178826 | 0.4750 | + | TMEM139 | protein_coding | 3.31e-10 | 4.24e-07 | 2.341624 | 7.60e+00 | 7.61e+00 | 7.59e+00 | 5.34e-02 | 5.37e-02 | 5.32e-02 | 9.88e+00 | 1.00e+01 | 9.94e+00 | 2.61e-01 | 2.83e-01 | 2.73e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr7 | 139993493 | 140104233 | ENSG00000157800 | 0.4522 | - | SLC37A3 | protein_coding | 6.36e-10 | 7.74e-07 | 2.344296 | 7.41e+00 | 7.16e+00 | 7.08e+00 | 6.60e-03 | 5.54e-03 | 5.23e-03 | 9.74e+00 | 9.38e+00 | 9.56e+00 | 3.34e-02 | 2.59e-02 | 2.94e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr20 | 56136136 | 56141513 | ENSG00000124253 | 0.4820 | + | PCK1 | protein_coding | 8.13e-10 | 9.42e-07 | -2.229595 | 1.26e+01 | 1.22e+01 | 1.18e+01 | 7.74e-01 | 5.93e-01 | 4.45e-01 | 1.01e+01 | 9.35e+00 | 1.03e+01 | 1.38e-01 | 8.39e-02 | 1.64e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 138855119 | 138862520 | ENSG00000184584 | 0.5357 | - | TMEM173 | protein_coding | 1.11e-09 | 1.23e-06 | 3.488286 | 1.58e+00 | 3.00e+00 | 2.81e+00 | 2.19e-04 | 7.65e-04 | 6.56e-04 | 5.95e+00 | 6.32e+00 | 5.91e+00 | 6.67e-03 | 8.64e-03 | 6.45e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr14 | 65405870 | 65409531 | ENSG00000176153 | 0.4801 | - | GPX2 | protein_coding | 1.51e-09 | 1.60e-06 | -2.577507 | 7.53e+00 | 7.74e+00 | 7.49e+00 | 4.32e-02 | 5.00e-02 | 4.20e-02 | 5.17e+00 | 5.00e+00 | 4.86e+00 | 8.21e-03 | 7.27e-03 | 6.57e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr17 | 76849059 | 76921469 | ENSG00000035862 | 0.5260 | - | TIMP2 | protein_coding | 2.92e-09 | 2.96e-06 | 3.098302 | 3.46e+00 | 3.17e+00 | 4.25e+00 | 1.53e-03 | 1.22e-03 | 2.75e-03 | 7.04e+00 | 6.77e+00 | 6.54e+00 | 2.00e-02 | 1.65e-02 | 1.41e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr19 | 49436939 | 49448226 | ENSG00000104808 | 0.5257 | + | DHDH | protein_coding | 6.50e-09 | 6.33e-06 | 3.630975 | 2.00e+00 | 1.58e+00 | 3.46e+00 | 8.58e-04 | 5.72e-04 | 2.86e-03 | 6.13e+00 | 6.27e+00 | 6.25e+00 | 1.97e-02 | 2.17e-02 | 2.15e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr15 | 78370150 | 78397251 | ENSG00000183476 | 0.4899 | + | SH2D7 | protein_coding | 7.43e-09 | 6.95e-06 | 4.178803 | 1.00e+00 | 2.00e+00 | 1.58e+00 | 3.86e-04 | 1.16e-03 | 7.72e-04 | 6.46e+00 | 5.36e+00 | 5.09e+00 | 3.36e-02 | 1.54e-02 | 1.27e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr9 | 139654086 | 139660707 | ENSG00000177984 | 0.6119 | - | LCN15 | protein_coding | 1.44e-08 | 1.27e-05 | -2.270252 | 6.97e+00 | 7.81e+00 | 7.43e+00 | 5.22e-02 | 9.38e-02 | 7.19e-02 | 5.32e+00 | 4.86e+00 | 5.29e+00 | 1.64e-02 | 1.18e-02 | 1.60e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr6 | 158244296 | 158366109 | ENSG00000130340 | 0.4079 | + | SNX9 | protein_coding | 1.46e-08 | 1.27e-05 | 2.414402 | 5.83e+00 | 5.43e+00 | 5.39e+00 | 1.63e-02 | 1.22e-02 | 1.19e-02 | 7.52e+00 | 8.07e+00 | 8.25e+00 | 5.30e-02 | 7.80e-02 | 8.85e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr12 | 27676364 | 27848497 | ENSG00000110841 | 0.3981 | + | PPFIBP1 | protein_coding | 2.90e-08 | 2.43e-05 | 2.371649 | 5.78e+00 | 5.39e+00 | 5.83e+00 | 2.96e-03 | 2.25e-03 | 3.07e-03 | 7.94e+00 | 8.03e+00 | 8.18e+00 | 1.34e-02 | 1.43e-02 | 1.58e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr15 | 78396948 | 78423886 | ENSG00000136425 | 0.5128 | - | CIB2 | protein_coding | 3.55e-08 | 2.88e-05 | 3.763766 | 1.00e+00 | 2.81e+00 | 1.58e+00 | 1.71e-04 | 1.03e-03 | 3.43e-04 | 6.46e+00 | 5.36e+00 | 5.09e+00 | 1.49e-02 | 6.85e-03 | 5.65e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr7 | 102220093 | 102257204 | ENSG00000105808 | 0.5633 | - | RASA4 | protein_coding | 3.77e-08 | 2.96e-05 | 4.123382 | 0.00e+00 | 1.00e+00 | 2.00e+00 | 0.00e+00 | 6.51e-05 | 1.95e-04 | 5.55e+00 | 5.00e+00 | 5.43e+00 | 2.99e-03 | 2.02e-03 | 2.73e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chrX | 47441712 | 47446188 | ENSG00000102265 | 0.5367 | + | TIMP1 | protein_coding | 7.40e-08 | 5.63e-05 | 1.970138 | 8.21e+00 | 7.73e+00 | 7.73e+00 | 8.89e-02 | 6.36e-02 | 6.36e-02 | 9.94e+00 | 1.01e+01 | 9.59e+00 | 2.95e-01 | 3.22e-01 | 2.32e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr9 | 123970072 | 124095121 | ENSG00000148180 | 0.4687 | + | GSN | protein_coding | 8.01e-08 | 5.91e-05 | 2.171979 | 6.21e+00 | 5.09e+00 | 5.58e+00 | 7.16e-03 | 3.24e-03 | 4.61e-03 | 7.79e+00 | 7.66e+00 | 8.12e+00 | 2.17e-02 | 1.97e-02 | 2.73e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 230838269 | 230850043 | ENSG00000135744 | 0.5369 | - | AGT | protein_coding | 1.01e-07 | 7.27e-05 | -2.228269 | 5.04e+00 | 6.21e+00 | 5.83e+00 | 1.76e-02 | 4.02e-02 | 3.09e-02 | 4.32e+00 | 2.81e+00 | 3.00e+00 | 1.05e-02 | 3.31e-03 | 3.86e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 17531621 | 17572500 | ENSG00000142623 | 0.5330 | + | PADI1 | protein_coding | 1.74e-07 | 1.21e-04 | -2.832273 | 5.75e+00 | 6.95e+00 | 6.83e+00 | 1.28e-02 | 2.96e-02 | 2.72e-02 | 3.81e+00 | 3.81e+00 | 3.70e+00 | 3.13e-03 | 3.13e-03 | 2.89e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr6 | 106959730 | 107018326 | ENSG00000112297 | 0.4014 | + | AIM1 | protein_coding | 2.82e-07 | 1.91e-04 | -2.383329 | 5.64e+00 | 5.09e+00 | 5.17e+00 | 8.95e-03 | 6.03e-03 | 6.40e-03 | 2.58e+00 | 3.58e+00 | 2.32e+00 | 9.14e-04 | 2.01e-03 | 7.31e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr10 | 98353069 | 98480271 | ENSG00000155629 | 0.4436 | - | PIK3AP1 | protein_coding | 3.25e-07 | 2.14e-04 | 2.184851 | 6.51e+00 | 5.39e+00 | 6.13e+00 | 1.54e-02 | 7.00e-03 | 1.18e-02 | 8.05e+00 | 8.31e+00 | 8.41e+00 | 4.51e-02 | 5.40e-02 | 5.81e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr8 | 62490779 | 62492230 | ENSG00000254285 | 0.5792 | + | KRT8P3 | pseudogene | 7.17e-07 | 4.60e-04 | 1.788910 | 9.00e+00 | 8.62e+00 | 8.56e+00 | 4.25e-01 | 3.27e-01 | 3.14e-01 | 1.06e+01 | 1.05e+01 | 1.05e+01 | 1.27e+00 | 1.19e+00 | 1.23e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 176307870 | 176326333 | ENSG00000160883 | 0.5428 | - | HK3 | protein_coding | 1.01e-06 | 6.32e-04 | -3.137504 | 2.58e+00 | 3.91e+00 | 4.52e+00 | 5.20e-04 | 1.46e-03 | 2.29e-03 | 0.00e+00 | 0.00e+00 | 1.58e+00 | 0.00e+00 | 0.00e+00 | 2.08e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr7 | 142457319 | 142460923 | ENSG00000204983 | 0.5198 | + | PRSS1 | protein_coding | 1.18e-06 | 7.17e-04 | -2.594008 | 6.32e+00 | 6.92e+00 | 6.89e+00 | 2.09e-02 | 3.17e-02 | 3.12e-02 | 3.17e+00 | 4.58e+00 | 4.32e+00 | 2.11e-03 | 6.07e-03 | 5.02e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr20 | 1290619 | 1309883 | ENSG00000125775 | 0.5049 | - | SDCBP2 | protein_coding | 1.32e-06 | 7.83e-04 | 2.472488 | 3.00e+00 | 3.00e+00 | 2.00e+00 | 4.21e-03 | 4.21e-03 | 1.81e-03 | 4.91e+00 | 5.17e+00 | 5.49e+00 | 1.74e-02 | 2.11e-02 | 2.65e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 151040657 | 151066726 | ENSG00000113140 | 0.4791 | - | SPARC | protein_coding | 1.53e-06 | 8.86e-04 | 2.712718 | 2.00e+00 | 2.00e+00 | 0.00e+00 | 3.08e-04 | 3.08e-04 | 0.00e+00 | 5.46e+00 | 3.58e+00 | 1.58e+00 | 4.41e-03 | 1.13e-03 | 2.05e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 159896829 | 159915386 | ENSG00000085552 | 0.5580 | - | IGSF9 | protein_coding | 1.72e-06 | 9.73e-04 | 2.640816 | 4.09e+00 | 3.46e+00 | 3.32e+00 | 1.07e-02 | 6.66e-03 | 5.99e-03 | 6.54e+00 | 6.41e+00 | 5.88e+00 | 6.13e-02 | 5.59e-02 | 3.86e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 26607819 | 26644854 | ENSG00000158062 | 0.5325 | - | UBXN11 | protein_coding | 2.41e-06 | 1.28e-03 | 1.770872 | 7.70e+00 | 7.28e+00 | 7.01e+00 | 2.76e-02 | 2.05e-02 | 1.71e-02 | 9.36e+00 | 9.11e+00 | 8.87e+00 | 8.76e-02 | 7.36e-02 | 6.22e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 26605667 | 26608007 | ENSG00000142669 | 0.6177 | + | SH3BGRL3 | protein_coding | 2.41e-06 | 1.28e-03 | 1.770872 | 7.70e+00 | 7.28e+00 | 7.01e+00 | 1.20e-01 | 8.91e-02 | 7.40e-02 | 9.36e+00 | 9.11e+00 | 8.87e+00 | 3.80e-01 | 3.19e-01 | 2.70e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Download the DEG result list for Ldc10Ctrl_vs_Ldc10Ig3.Download the whole result list for Ldc10Ctrl_vs_Ldc10Ig3.DEG table for the contrast Ldc10Ctrl_vs_Ldc10Ig4The following table presents the top 5% statistically significant genes (use the download links below the table to retrieve the whole list) for the contrast Ldc10Ctrl_vs_Ldc10Ig4. The fields of the table correspond to the requested features to be exported. The table can be searched using the search field on the top right. | chromosome | start | end | gene_id | gc_content | strand | gene_name | biotype | p-value_deseq | FDR_deseq | log2_normalized_fold_change_Ldc10Ctrl_vs_Ldc10Ig4 | log2_normalized_counts_PH3R16-Ldc10-Ctrl3 | log2_normalized_counts_PH3R14-Ldc10-Ctrl1 | log2_normalized_counts_PH3R15-Ldc10-Ctrl2 | rpgm_normalized_counts_PH3R16-Ldc10-Ctrl3 | rpgm_normalized_counts_PH3R14-Ldc10-Ctrl1 | rpgm_normalized_counts_PH3R15-Ldc10-Ctrl2 | log2_normalized_counts_PH3R20-Ldc10-Ig4-1 | log2_normalized_counts_PH3R21-Ldc10-Ig4-2 | log2_normalized_counts_PH3R22-Ldc10-Ig4-3 | rpgm_normalized_counts_PH3R20-Ldc10-Ig4-1 | rpgm_normalized_counts_PH3R21-Ldc10-Ig4-2 | rpgm_normalized_counts_PH3R22-Ldc10-Ig4-3 | LN | AR | MD | MN | QN | KN | CM | BT |
|---|
| chr12 | 52817854 | 52828309 | ENSG00000170454 | 0.4945 | - | KRT75 | protein_coding | 1.64e-36 | 4.00e-32 | -5.414461 | 1.06e+01 | 1.11e+01 | 1.10e+01 | 9.41e-01 | 1.36e+00 | 1.26e+00 | 5.52e+00 | 5.43e+00 | 5.58e+00 | 2.74e-02 | 2.56e-02 | 2.86e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 159931008 | 159948851 | ENSG00000224259 | 0.4525 | + | LINC01133 | lincRNA | 1.57e-31 | 1.91e-27 | 5.779610 | 2.32e+00 | 2.81e+00 | 1.58e+00 | 1.67e-03 | 2.51e-03 | 8.36e-04 | 8.16e+00 | 7.91e+00 | 8.21e+00 | 1.20e-01 | 1.00e-01 | 1.23e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 63340667 | 63384355 | ENSG00000176485 | 0.4584 | - | PLA2G16 | protein_coding | 2.08e-18 | 1.69e-14 | 3.819571 | 4.00e+00 | 3.81e+00 | 3.58e+00 | 3.55e-03 | 3.08e-03 | 2.60e-03 | 7.44e+00 | 7.64e+00 | 7.78e+00 | 4.09e-02 | 4.68e-02 | 5.18e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr10 | 76854192 | 76868979 | ENSG00000079393 | 0.5486 | - | DUSP13 | protein_coding | 1.34e-16 | 8.17e-13 | 4.830587 | 2.00e+00 | 1.58e+00 | 2.00e+00 | 3.40e-04 | 2.26e-04 | 3.40e-04 | 6.67e+00 | 6.74e+00 | 6.70e+00 | 1.14e-02 | 1.20e-02 | 1.17e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr14 | 94571182 | 94583033 | ENSG00000165949 | 0.4867 | + | IFI27 | protein_coding | 1.71e-16 | 8.33e-13 | 3.439254 | 4.25e+00 | 4.91e+00 | 4.52e+00 | 2.85e-03 | 4.59e-03 | 3.48e-03 | 7.27e+00 | 7.75e+00 | 8.69e+00 | 2.42e-02 | 3.38e-02 | 6.50e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 151040657 | 151066726 | ENSG00000113140 | 0.4791 | - | SPARC | protein_coding | 1.63e-12 | 6.62e-09 | 3.724893 | 2.00e+00 | 2.00e+00 | 0.00e+00 | 3.08e-04 | 3.08e-04 | 0.00e+00 | 1.58e+00 | 2.32e+00 | 6.79e+00 | 2.05e-04 | 4.10e-04 | 1.13e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 17531621 | 17572500 | ENSG00000142623 | 0.5330 | + | PADI1 | protein_coding | 6.54e-11 | 2.27e-07 | -3.867896 | 5.75e+00 | 6.95e+00 | 6.83e+00 | 1.28e-02 | 2.96e-02 | 2.72e-02 | 3.32e+00 | 2.58e+00 | 2.00e+00 | 2.17e-03 | 1.20e-03 | 7.22e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr7 | 142478064 | 142482416 | ENSG00000250606 | 0.5040 | + | PRSS3P2 | pseudogene | 1.56e-10 | 4.75e-07 | -4.473931 | 5.81e+00 | 6.30e+00 | 6.02e+00 | 2.28e-02 | 3.24e-02 | 2.66e-02 | 2.58e+00 | 0.00e+00 | 1.00e+00 | 2.08e-03 | 0.00e+00 | 4.15e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr13 | 53602894 | 53626192 | ENSG00000102837 | 0.4009 | + | OLFM4 | protein_coding | 3.21e-10 | 8.48e-07 | -3.637874 | 7.21e+00 | 6.97e+00 | 6.46e+00 | 5.92e-02 | 5.00e-02 | 3.51e-02 | 4.25e+00 | 2.32e+00 | 2.32e+00 | 7.25e-03 | 1.61e-03 | 1.61e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr8 | 118806729 | 119124092 | ENSG00000182197 | 0.4116 | - | EXT1 | protein_coding | 3.48e-10 | 8.48e-07 | 2.427366 | 6.89e+00 | 6.64e+00 | 6.86e+00 | 7.50e-03 | 6.29e-03 | 7.31e-03 | 7.55e+00 | 7.88e+00 | 1.04e+01 | 1.18e-02 | 1.49e-02 | 8.76e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 196313256 | 196343649 | ENSG00000224099 | 0.3760 | + | AC064834.1 | lincRNA | 1.88e-09 | 4.17e-06 | -3.015942 | 6.89e+00 | 7.07e+00 | 6.79e+00 | 9.87e-02 | 1.11e-01 | 9.20e-02 | 4.25e+00 | 3.32e+00 | 4.00e+00 | 1.51e-02 | 7.53e-03 | 1.25e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 65779312 | 65780976 | ENSG00000175315 | 0.6300 | + | CST6 | protein_coding | 2.45e-09 | 4.60e-06 | 4.714246 | 1.00e+00 | 0.00e+00 | 0.00e+00 | 7.69e-04 | 0.00e+00 | 0.00e+00 | 4.75e+00 | 5.29e+00 | 5.29e+00 | 2.00e-02 | 2.92e-02 | 2.92e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr9 | 33441152 | 33447609 | ENSG00000165272 | 0.5565 | - | AQP3 | protein_coding | 2.46e-09 | 4.60e-06 | 2.187526 | 9.14e+00 | 9.77e+00 | 9.37e+00 | 1.68e-01 | 2.60e-01 | 1.97e-01 | 1.17e+01 | 1.17e+01 | 1.15e+01 | 1.02e+00 | 9.80e-01 | 8.51e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr19 | 39292311 | 39304004 | ENSG00000171747 | 0.5231 | - | LGALS4 | protein_coding | 4.34e-09 | 7.54e-06 | 2.196397 | 7.68e+00 | 7.55e+00 | 7.61e+00 | 2.67e-02 | 2.44e-02 | 2.56e-02 | 9.90e+00 | 9.80e+00 | 9.73e+00 | 1.25e-01 | 1.16e-01 | 1.11e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr22 | 38071615 | 38075813 | ENSG00000100097 | 0.5678 | + | LGALS1 | protein_coding | 1.99e-08 | 3.23e-05 | 2.389274 | 5.75e+00 | 4.95e+00 | 4.81e+00 | 8.88e-03 | 5.02e-03 | 4.52e-03 | 7.36e+00 | 7.40e+00 | 8.02e+00 | 2.73e-02 | 2.81e-02 | 4.32e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr17 | 40554470 | 40575535 | ENSG00000177469 | 0.5270 | - | PTRF | protein_coding | 2.66e-08 | 4.05e-05 | 2.941897 | 3.46e+00 | 2.00e+00 | 2.00e+00 | 2.91e-03 | 8.74e-04 | 8.74e-04 | 4.52e+00 | 4.39e+00 | 6.67e+00 | 6.41e-03 | 5.83e-03 | 2.94e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr20 | 56136136 | 56141513 | ENSG00000124253 | 0.4820 | + | PCK1 | protein_coding | 6.72e-08 | 9.22e-05 | -1.983671 | 1.26e+01 | 1.22e+01 | 1.18e+01 | 7.74e-01 | 5.93e-01 | 4.45e-01 | 1.05e+01 | 9.76e+00 | 1.03e+01 | 1.88e-01 | 1.12e-01 | 1.58e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr9 | 123970072 | 124095121 | ENSG00000148180 | 0.4687 | + | GSN | protein_coding | 6.82e-08 | 9.22e-05 | 2.198414 | 6.21e+00 | 5.09e+00 | 5.58e+00 | 7.16e-03 | 3.24e-03 | 4.61e-03 | 7.73e+00 | 8.10e+00 | 7.85e+00 | 2.07e-02 | 2.68e-02 | 2.25e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chrX | 148564074 | 148615470 | ENSG00000241489 | 0.4659 | - | IDS | protein_coding | 7.45e-08 | 9.55e-05 | 2.321928 | 4.52e+00 | 5.25e+00 | 5.46e+00 | 4.41e-03 | 7.42e-03 | 8.62e-03 | 7.36e+00 | 7.69e+00 | 7.28e+00 | 3.27e-02 | 4.11e-02 | 3.09e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr4 | 3768075 | 3770251 | ENSG00000184160 | 0.6968 | + | ADRA2C | protein_coding | 1.41e-07 | 1.72e-04 | -2.060882 | 7.43e+00 | 8.22e+00 | 8.00e+00 | 1.01e-01 | 1.76e-01 | 1.51e-01 | 5.49e+00 | 5.91e+00 | 6.11e+00 | 2.60e-02 | 3.49e-02 | 4.02e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chrX | 47441712 | 47446188 | ENSG00000102265 | 0.5367 | + | TIMP1 | protein_coding | 1.56e-07 | 1.80e-04 | 1.901001 | 8.21e+00 | 7.73e+00 | 7.73e+00 | 8.89e-02 | 6.36e-02 | 6.36e-02 | 1.01e+01 | 9.61e+00 | 9.64e+00 | 3.33e-01 | 2.36e-01 | 2.40e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr7 | 142468264 | 142471794 | ENSG00000250591 | 0.5140 | + | PRSS3P1 | pseudogene | 1.80e-07 | 1.99e-04 | -3.337035 | 5.81e+00 | 6.23e+00 | 5.93e+00 | 4.59e-02 | 6.18e-02 | 5.01e-02 | 1.58e+00 | 2.58e+00 | 3.32e+00 | 1.67e-03 | 4.17e-03 | 7.51e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr20 | 1290619 | 1309883 | ENSG00000125775 | 0.5049 | - | SDCBP2 | protein_coding | 2.44e-07 | 2.58e-04 | 2.678072 | 3.00e+00 | 3.00e+00 | 2.00e+00 | 4.21e-03 | 4.21e-03 | 1.81e-03 | 5.49e+00 | 5.58e+00 | 5.13e+00 | 2.65e-02 | 2.83e-02 | 2.05e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 137774706 | 137782658 | ENSG00000132563 | 0.5831 | + | REEP2 | protein_coding | 3.13e-07 | 3.18e-04 | 4.196397 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 4.25e+00 | 4.39e+00 | 3.91e+00 | 2.44e-03 | 2.72e-03 | 1.90e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 201827986 | 201873825 | ENSG00000183308 | 0.3960 | + | AC005037.3 | antisense | 4.08e-07 | 3.98e-04 | 2.175442 | 4.58e+00 | 5.32e+00 | 4.52e+00 | 9.62e-03 | 1.63e-02 | 9.20e-03 | 6.81e+00 | 7.36e+00 | 6.87e+00 | 4.64e-02 | 6.81e-02 | 4.85e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr7 | 142457319 | 142460923 | ENSG00000204983 | 0.5198 | + | PRSS1 | protein_coding | 6.04e-07 | 5.54e-04 | -2.678072 | 6.32e+00 | 6.92e+00 | 6.89e+00 | 2.09e-02 | 3.17e-02 | 3.12e-02 | 4.32e+00 | 3.81e+00 | 4.00e+00 | 5.02e-03 | 3.43e-03 | 3.96e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 130318869 | 130346532 | ENSG00000166106 | 0.5166 | + | ADAMTS15 | protein_coding | 6.14e-07 | 5.54e-04 | -2.189991 | 7.09e+00 | 7.73e+00 | 7.60e+00 | 3.36e-02 | 5.28e-02 | 4.81e-02 | 5.49e+00 | 5.36e+00 | 5.04e+00 | 1.10e-02 | 9.97e-03 | 7.98e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 98104354 | 98134347 | ENSG00000174136 | 0.4329 | + | RGMB | protein_coding | 7.23e-07 | 6.29e-04 | -1.794626 | 9.45e+00 | 9.44e+00 | 9.54e+00 | 7.06e-02 | 7.01e-02 | 7.52e-02 | 7.78e+00 | 7.77e+00 | 7.48e+00 | 2.21e-02 | 2.20e-02 | 1.79e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr17 | 42422614 | 42430470 | ENSG00000030582 | 0.5776 | + | GRN | protein_coding | 1.91e-06 | 1.60e-03 | 1.698398 | 8.22e+00 | 8.64e+00 | 8.61e+00 | 3.04e-02 | 4.07e-02 | 4.01e-02 | 9.48e+00 | 9.99e+00 | 1.08e+01 | 7.33e-02 | 1.04e-01 | 1.84e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr6 | 106959730 | 107018326 | ENSG00000112297 | 0.4014 | + | AIM1 | protein_coding | 2.02e-06 | 1.61e-03 | -2.099536 | 5.64e+00 | 5.09e+00 | 5.17e+00 | 8.95e-03 | 6.03e-03 | 6.40e-03 | 3.70e+00 | 3.46e+00 | 2.00e+00 | 2.19e-03 | 1.83e-03 | 5.48e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr17 | 42430583 | 42441243 | ENSG00000161682 | 0.6061 | - | FAM171A2 | protein_coding | 2.05e-06 | 1.61e-03 | 1.693104 | 8.23e+00 | 8.64e+00 | 8.62e+00 | 3.85e-02 | 5.11e-02 | 5.06e-02 | 9.48e+00 | 9.99e+00 | 1.08e+01 | 9.19e-02 | 1.31e-01 | 2.31e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 1151580 | 1222364 | ENSG00000215182 | 0.6469 | + | MUC5AC | protein_coding | 2.19e-06 | 1.67e-03 | -2.498251 | 5.93e+00 | 7.39e+00 | 6.78e+00 | 2.51e-02 | 6.98e-02 | 4.55e-02 | 4.58e+00 | 4.00e+00 | 4.32e+00 | 9.61e-03 | 6.27e-03 | 7.94e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr16 | 87863629 | 87903094 | ENSG00000103257 | 0.5841 | - | SLC7A5 | protein_coding | 2.50e-06 | 1.78e-03 | -1.681871 | 9.64e+00 | 1.04e+01 | 1.07e+01 | 1.92e-01 | 3.25e-01 | 4.00e-01 | 8.68e+00 | 8.77e+00 | 8.41e+00 | 9.85e-02 | 1.05e-01 | 8.18e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr14 | 55590828 | 55612126 | ENSG00000131981 | 0.4463 | + | LGALS3 | protein_coding | 2.53e-06 | 1.78e-03 | 1.791616 | 6.98e+00 | 6.54e+00 | 6.60e+00 | 1.96e-02 | 1.45e-02 | 1.51e-02 | 8.38e+00 | 8.43e+00 | 8.69e+00 | 5.23e-02 | 5.42e-02 | 6.49e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr19 | 10812106 | 10824113 | ENSG00000213339 | 0.5281 | + | QTRT1 | protein_coding | 2.55e-06 | 1.78e-03 | -2.327687 | 5.70e+00 | 6.60e+00 | 6.67e+00 | 5.32e-03 | 1.00e-02 | 1.05e-02 | 3.91e+00 | 4.09e+00 | 4.17e+00 | 1.46e-03 | 1.67e-03 | 1.77e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr13 | 46917102 | 47012325 | ENSG00000241353 | 0.4052 | - | PPP1R2P4 | pseudogene | 2.89e-06 | 1.95e-03 | -1.802319 | 8.24e+00 | 8.19e+00 | 8.04e+00 | 1.26e-01 | 1.22e-01 | 1.10e-01 | 6.39e+00 | 5.91e+00 | 6.67e+00 | 3.47e-02 | 2.47e-02 | 4.22e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr15 | 89753100 | 89764982 | ENSG00000140522 | 0.4907 | - | RLBP1 | protein_coding | 3.20e-06 | 2.11e-03 | 1.917946 | 6.29e+00 | 6.17e+00 | 5.86e+00 | 1.22e-02 | 1.12e-02 | 9.01e-03 | 8.21e+00 | 8.06e+00 | 7.81e+00 | 4.66e-02 | 4.19e-02 | 3.53e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 27992572 | 27998729 | ENSG00000126709 | 0.5003 | - | IFI6 | protein_coding | 3.64e-06 | 2.30e-03 | 2.367371 | 2.32e+00 | 3.00e+00 | 3.58e+00 | 2.64e-03 | 4.62e-03 | 7.26e-03 | 4.70e+00 | 4.70e+00 | 6.27e+00 | 1.65e-02 | 1.65e-02 | 5.01e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 65190245 | 65213011 | ENSG00000245532 | 0.4406 | + | NEAT1 | lincRNA | 3.68e-06 | 2.30e-03 | 1.709362 | 6.27e+00 | 6.60e+00 | 6.21e+00 | 1.59e-02 | 2.01e-02 | 1.53e-02 | 8.17e+00 | 8.10e+00 | 7.95e+00 | 6.02e-02 | 5.71e-02 | 5.16e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr13 | 46916139 | 47012325 | ENSG00000102445 | 0.4050 | - | KIAA0226L | protein_coding | 3.89e-06 | 2.36e-03 | -1.769756 | 8.26e+00 | 8.26e+00 | 8.11e+00 | 2.01e-02 | 2.01e-02 | 1.82e-02 | 6.51e+00 | 6.02e+00 | 6.71e+00 | 5.92e-03 | 4.21e-03 | 6.84e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr16 | 56622986 | 56625000 | ENSG00000087250 | 0.6139 | + | MT3 | protein_coding | 4.17e-06 | 2.48e-03 | 3.012824 | 3.32e+00 | 1.58e+00 | 0.00e+00 | 3.24e-03 | 7.19e-04 | 0.00e+00 | 5.52e+00 | 5.13e+00 | 5.00e+00 | 1.62e-02 | 1.22e-02 | 1.12e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr12 | 53547056 | 53548268 | ENSG00000257790 | 0.4913 | + | RP11-1136G11.6 | pseudogene | 6.11e-06 | 3.54e-03 | -1.946939 | 5.81e+00 | 6.95e+00 | 7.38e+00 | 4.60e-02 | 1.03e-01 | 1.39e-01 | 4.95e+00 | 5.17e+00 | 4.52e+00 | 2.51e-02 | 2.93e-02 | 1.84e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chrX | 43625858 | 43741693 | ENSG00000069535 | 0.3931 | - | MAOB | protein_coding | 6.35e-06 | 3.60e-03 | 1.927355 | 3.32e+00 | 4.70e+00 | 4.32e+00 | 1.60e-03 | 4.45e-03 | 3.38e-03 | 6.27e+00 | 6.27e+00 | 5.88e+00 | 1.35e-02 | 1.35e-02 | 1.03e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr6 | 112429963 | 112576141 | ENSG00000112769 | 0.3914 | - | LAMA4 | protein_coding | 6.66e-06 | 3.69e-03 | 3.672425 | 0.00e+00 | 0.00e+00 | 1.00e+00 | 0.00e+00 | 0.00e+00 | 4.32e-05 | 4.09e+00 | 3.91e+00 | 4.25e+00 | 6.91e-04 | 6.05e-04 | 7.77e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr7 | 95107756 | 95169544 | ENSG00000005981 | 0.3827 | + | ASB4 | protein_coding | 7.40e-06 | 3.96e-03 | 2.662965 | 1.00e+00 | 1.58e+00 | 0.00e+00 | 1.54e-04 | 3.08e-04 | 0.00e+00 | 3.46e+00 | 4.00e+00 | 3.46e+00 | 1.54e-03 | 2.31e-03 | 1.54e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr10 | 54074056 | 54077802 | ENSG00000107984 | 0.4326 | + | DKK1 | protein_coding | 7.57e-06 | 3.96e-03 | 2.533432 | 2.58e+00 | 1.58e+00 | 3.32e+00 | 1.13e-03 | 4.51e-04 | 2.03e-03 | 5.17e+00 | 4.64e+00 | 5.61e+00 | 7.89e-03 | 5.41e-03 | 1.08e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr17 | 5344232 | 5372380 | ENSG00000005100 | 0.4581 | - | DHX33 | protein_coding | 7.65e-06 | 3.96e-03 | -1.696442 | 9.36e+00 | 6.79e+00 | 7.08e+00 | 4.32e-02 | 7.27e-03 | 8.86e-03 | 6.63e+00 | 6.51e+00 | 6.46e+00 | 6.48e-03 | 5.95e-03 | 5.75e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr20 | 1246960 | 1289972 | ENSG00000101298 | 0.5047 | + | SNPH | protein_coding | 8.15e-06 | 4.14e-03 | 2.450661 | 2.32e+00 | 2.81e+00 | 1.58e+00 | 8.95e-04 | 1.34e-03 | 4.47e-04 | 4.75e+00 | 4.86e+00 | 4.70e+00 | 5.82e-03 | 6.26e-03 | 5.59e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr4 | 15937192 | 15940363 | ENSG00000137440 | 0.4644 | - | FGFBP1 | protein_coding | 8.54e-06 | 4.22e-03 | -1.642155 | 9.46e+00 | 9.25e+00 | 8.93e+00 | 4.53e-01 | 3.90e-01 | 3.13e-01 | 7.43e+00 | 7.13e+00 | 8.05e+00 | 1.10e-01 | 8.94e-02 | 1.70e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr22 | 37415676 | 37425863 | ENSG00000128309 | 0.5528 | + | MPST | protein_coding | 8.67e-06 | 4.22e-03 | -1.716546 | 7.78e+00 | 9.29e+00 | 8.54e+00 | 7.69e-02 | 2.19e-01 | 1.30e-01 | 7.22e+00 | 6.86e+00 | 6.71e+00 | 5.20e-02 | 4.04e-02 | 3.65e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr9 | 34650699 | 34661889 | ENSG00000137070 | 0.5420 | + | IL11RA | protein_coding | 9.25e-06 | 4.31e-03 | 2.132450 | 4.39e+00 | 4.17e+00 | 4.70e+00 | 1.70e-03 | 1.45e-03 | 2.13e-03 | 6.71e+00 | 6.52e+00 | 6.46e+00 | 8.85e-03 | 7.74e-03 | 7.40e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr3 | 49057892 | 49060928 | ENSG00000178057 | 0.6414 | + | NDUFAF3 | protein_coding | 9.32e-06 | 4.31e-03 | 1.674450 | 6.46e+00 | 6.98e+00 | 7.08e+00 | 5.73e-02 | 8.23e-02 | 8.82e-02 | 7.46e+00 | 7.82e+00 | 9.48e+00 | 1.15e-01 | 1.48e-01 | 4.68e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 224839829 | 224904036 | ENSG00000135919 | 0.4321 | - | SERPINE2 | protein_coding | 9.42e-06 | 4.31e-03 | 1.807355 | 6.19e+00 | 5.88e+00 | 6.04e+00 | 1.58e-02 | 1.27e-02 | 1.42e-02 | 8.02e+00 | 7.49e+00 | 7.98e+00 | 5.67e-02 | 3.92e-02 | 5.52e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr21 | 47401651 | 47424964 | ENSG00000142156 | 0.6467 | + | COL6A1 | protein_coding | 9.55e-06 | 4.31e-03 | 2.169925 | 2.81e+00 | 3.58e+00 | 2.81e+00 | 1.03e-03 | 1.89e-03 | 1.03e-03 | 5.43e+00 | 5.32e+00 | 5.09e+00 | 7.22e-03 | 6.70e-03 | 5.67e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 566454 | 567996 | ENSG00000237973 | 0.4576 | + | hsa-mir-6723 | pseudogene | 1.04e-05 | 4.59e-03 | 1.637430 | 8.05e+00 | 7.56e+00 | 7.85e+00 | 2.21e-01 | 1.57e-01 | 1.91e-01 | 8.90e+00 | 9.79e+00 | 9.57e+00 | 3.99e-01 | 7.42e-01 | 6.36e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 17575593 | 17610728 | ENSG00000142619 | 0.5148 | + | PADI3 | protein_coding | 1.15e-05 | 5.00e-03 | -1.795269 | 7.49e+00 | 8.70e+00 | 8.47e+00 | 7.62e-02 | 1.77e-01 | 1.51e-01 | 6.51e+00 | 6.58e+00 | 6.44e+00 | 3.83e-02 | 4.04e-02 | 3.66e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr6 | 47653600 | 47689757 | ENSG00000153294 | 0.4130 | + | GPR115 | protein_coding | 1.20e-05 | 5.11e-03 | 2.364572 | 3.17e+00 | 3.91e+00 | 4.00e+00 | 2.66e-03 | 4.65e-03 | 4.98e-03 | 5.98e+00 | 6.46e+00 | 5.78e+00 | 2.06e-02 | 2.89e-02 | 1.79e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 175126123 | 175162135 | ENSG00000235750 | 0.4488 | - | KIAA0040 | protein_coding | 1.23e-05 | 5.15e-03 | 3.222392 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 2.58e+00 | 3.00e+00 | 3.81e+00 | 8.15e-04 | 1.14e-03 | 2.12e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr9 | 139654086 | 139660707 | ENSG00000177984 | 0.6119 | - | LCN15 | protein_coding | 1.34e-05 | 5.52e-03 | -1.721359 | 6.97e+00 | 7.81e+00 | 7.43e+00 | 5.22e-02 | 9.38e-02 | 7.19e-02 | 5.88e+00 | 5.73e+00 | 5.52e+00 | 2.44e-02 | 2.19e-02 | 1.89e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr14 | 65405870 | 65409531 | ENSG00000176153 | 0.4801 | - | GPX2 | protein_coding | 1.39e-05 | 5.64e-03 | -1.828691 | 7.53e+00 | 7.74e+00 | 7.49e+00 | 4.32e-02 | 5.00e-02 | 4.20e-02 | 5.98e+00 | 5.09e+00 | 6.04e+00 | 1.45e-02 | 7.74e-03 | 1.53e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 176307870 | 176326333 | ENSG00000160883 | 0.5428 | - | HK3 | protein_coding | 1.51e-05 | 5.91e-03 | -2.652077 | 2.58e+00 | 3.91e+00 | 4.52e+00 | 5.20e-04 | 1.46e-03 | 2.29e-03 | 1.58e+00 | 0.00e+00 | 1.58e+00 | 2.08e-04 | 0.00e+00 | 2.08e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr9 | 34661877 | 34664045 | ENSG00000213927 | 0.5145 | - | CCL27 | protein_coding | 1.53e-05 | 5.91e-03 | 2.098032 | 4.32e+00 | 4.17e+00 | 4.70e+00 | 1.51e-02 | 1.35e-02 | 1.98e-02 | 6.67e+00 | 6.43e+00 | 6.43e+00 | 8.02e-02 | 6.75e-02 | 6.75e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr9 | 34661900 | 34666026 | ENSG00000261215 | 0.5600 | - | RP11-195F19.30 | processed_transcript | 1.53e-05 | 5.91e-03 | 2.098032 | 4.32e+00 | 4.17e+00 | 4.70e+00 | 1.59e-02 | 1.42e-02 | 2.09e-02 | 6.67e+00 | 6.43e+00 | 6.43e+00 | 8.44e-02 | 7.11e-02 | 7.11e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chrX | 73422669 | 73424430 | ENSG00000228492 | 0.4699 | + | RAB11FIP1P1 | pseudogene | 1.65e-05 | 6.28e-03 | 2.874469 | 0.00e+00 | 2.81e+00 | 0.00e+00 | 0.00e+00 | 5.02e-03 | 0.00e+00 | 3.70e+00 | 4.91e+00 | 4.52e+00 | 1.00e-02 | 2.42e-02 | 1.84e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 65154070 | 65180996 | ENSG00000126391 | 0.5627 | + | FRMD8 | protein_coding | 1.68e-05 | 6.31e-03 | 1.518548 | 8.65e+00 | 8.96e+00 | 8.78e+00 | 4.75e-02 | 5.89e-02 | 5.18e-02 | 1.02e+01 | 1.04e+01 | 1.04e+01 | 1.41e-01 | 1.55e-01 | 1.58e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Download the DEG result list for Ldc10Ctrl_vs_Ldc10Ig4.Download the whole result list for Ldc10Ctrl_vs_Ldc10Ig4.DEG table for the contrast Ldc10Ig3_vs_Ldc10Ig4The following table presents the top 5% statistically significant genes (use the download links below the table to retrieve the whole list) for the contrast Ldc10Ig3_vs_Ldc10Ig4. The fields of the table correspond to the requested features to be exported. The table can be searched using the search field on the top right. | chromosome | start | end | gene_id | gc_content | strand | gene_name | biotype | p-value_deseq | FDR_deseq | log2_normalized_fold_change_Ldc10Ig3_vs_Ldc10Ig4 | log2_normalized_counts_PH3R17-Ldc10-Ig3-1 | log2_normalized_counts_PH3R18-Ldc10-Ig3-2 | log2_normalized_counts_PH3R19-Ldc10-Ig3-3 | rpgm_normalized_counts_PH3R17-Ldc10-Ig3-1 | rpgm_normalized_counts_PH3R18-Ldc10-Ig3-2 | rpgm_normalized_counts_PH3R19-Ldc10-Ig3-3 | log2_normalized_counts_PH3R20-Ldc10-Ig4-1 | log2_normalized_counts_PH3R21-Ldc10-Ig4-2 | log2_normalized_counts_PH3R22-Ldc10-Ig4-3 | rpgm_normalized_counts_PH3R20-Ldc10-Ig4-1 | rpgm_normalized_counts_PH3R21-Ldc10-Ig4-2 | rpgm_normalized_counts_PH3R22-Ldc10-Ig4-3 | LN | AR | MD | MN | QN | KN | CM | BT |
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| chr2 | 27476552 | 27498685 | ENSG00000115194 | 0.5210 | - | SLC30A3 | protein_coding | 5.98e-58 | 1.46e-53 | -8.059885 | 1.08e+01 | 1.06e+01 | 1.10e+01 | 2.49e-01 | 2.24e-01 | 2.80e-01 | 2.58e+00 | 2.58e+00 | 3.00e+00 | 7.05e-04 | 7.05e-04 | 9.87e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr20 | 21106624 | 21227260 | ENSG00000088970 | 0.4117 | + | PLK1S1 | processed_transcript | 1.29e-23 | 1.57e-19 | -4.414772 | 9.34e+00 | 9.38e+00 | 8.96e+00 | 1.35e-01 | 1.39e-01 | 1.04e-01 | 5.04e+00 | 4.70e+00 | 4.70e+00 | 6.68e-03 | 5.22e-03 | 5.22e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr15 | 74471807 | 74504608 | ENSG00000137868 | 0.5521 | - | STRA6 | protein_coding | 7.55e-18 | 6.13e-14 | -5.436295 | 7.54e+00 | 6.98e+00 | 6.92e+00 | 1.41e-02 | 9.54e-03 | 9.16e-03 | 2.00e+00 | 0.00e+00 | 2.32e+00 | 2.29e-04 | 0.00e+00 | 3.05e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr6 | 31582961 | 31584798 | ENSG00000204472 | 0.5397 | + | AIF1 | protein_coding | 9.62e-17 | 5.85e-13 | -5.695808 | 6.63e+00 | 6.99e+00 | 6.41e+00 | 3.90e-02 | 5.01e-02 | 3.34e-02 | 0.00e+00 | 1.58e+00 | 1.00e+00 | 0.00e+00 | 7.96e-04 | 3.98e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr19 | 39292311 | 39304004 | ENSG00000171747 | 0.5231 | - | LGALS4 | protein_coding | 1.32e-16 | 6.43e-13 | 3.206245 | 6.78e+00 | 6.30e+00 | 6.69e+00 | 1.43e-02 | 1.02e-02 | 1.34e-02 | 9.90e+00 | 9.80e+00 | 9.73e+00 | 1.25e-01 | 1.16e-01 | 1.11e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr3 | 26664297 | 26752267 | ENSG00000179796 | 0.3951 | + | LRRC3B | protein_coding | 1.55e-13 | 6.28e-10 | -5.426265 | 6.21e+00 | 6.21e+00 | 6.07e+00 | 1.43e-02 | 1.43e-02 | 1.29e-02 | 1.58e+00 | 0.00e+00 | 0.00e+00 | 3.92e-04 | 0.00e+00 | 0.00e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr14 | 106383838 | 106391825 | ENSG00000226777 | 0.5600 | + | KIAA0125 | protein_coding | 1.60e-12 | 5.56e-09 | -5.672425 | 6.13e+00 | 5.58e+00 | 5.13e+00 | 2.85e-02 | 1.94e-02 | 1.40e-02 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 138855119 | 138862520 | ENSG00000184584 | 0.5357 | - | TMEM173 | protein_coding | 3.29e-10 | 1.00e-06 | -3.658211 | 5.95e+00 | 6.32e+00 | 5.91e+00 | 6.67e-03 | 8.64e-03 | 6.45e-03 | 2.00e+00 | 1.58e+00 | 3.17e+00 | 3.28e-04 | 2.19e-04 | 8.75e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 220299568 | 220363009 | ENSG00000072195 | 0.5768 | + | SPEG | protein_coding | 1.10e-09 | 2.97e-06 | -4.505528 | 5.43e+00 | 5.73e+00 | 5.98e+00 | 2.39e-03 | 2.96e-03 | 3.53e-03 | 1.58e+00 | 1.00e+00 | 1.00e+00 | 1.14e-04 | 5.69e-05 | 5.69e-05 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr7 | 142977050 | 142985141 | ENSG00000178826 | 0.4750 | + | TMEM139 | protein_coding | 2.01e-09 | 4.90e-06 | -2.243411 | 9.88e+00 | 1.00e+01 | 9.94e+00 | 2.61e-01 | 2.83e-01 | 2.73e-01 | 7.99e+00 | 7.29e+00 | 7.73e+00 | 7.03e-02 | 4.29e-02 | 5.84e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr7 | 139993493 | 140104233 | ENSG00000157800 | 0.4522 | - | SLC37A3 | protein_coding | 3.33e-09 | 7.38e-06 | -2.226838 | 9.74e+00 | 9.38e+00 | 9.56e+00 | 3.34e-02 | 2.59e-02 | 2.94e-02 | 7.30e+00 | 7.22e+00 | 7.48e+00 | 6.13e-03 | 5.78e-03 | 6.95e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 235401685 | 235405697 | ENSG00000188042 | 0.5016 | - | ARL4C | protein_coding | 2.19e-08 | 4.43e-05 | -2.146455 | 8.48e+00 | 8.43e+00 | 8.51e+00 | 8.58e-02 | 8.26e-02 | 8.72e-02 | 6.29e+00 | 6.36e+00 | 6.34e+00 | 1.85e-02 | 1.95e-02 | 1.92e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 201827986 | 201873825 | ENSG00000183308 | 0.3960 | + | AC005037.3 | antisense | 7.14e-08 | 1.34e-04 | 2.370458 | 4.58e+00 | 4.09e+00 | 5.13e+00 | 9.62e-03 | 6.69e-03 | 1.42e-02 | 6.81e+00 | 7.36e+00 | 6.87e+00 | 4.64e-02 | 6.81e-02 | 4.85e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr8 | 118806729 | 119124092 | ENSG00000182197 | 0.4116 | - | EXT1 | protein_coding | 1.26e-07 | 2.10e-04 | 2.004812 | 6.61e+00 | 6.97e+00 | 7.82e+00 | 6.17e-03 | 7.88e-03 | 1.43e-02 | 7.55e+00 | 7.88e+00 | 1.04e+01 | 1.18e-02 | 1.49e-02 | 8.76e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr19 | 51320937 | 51322134 | ENSG00000180279 | 0.6227 | + | CTD-2568A17.5 | lincRNA | 1.29e-07 | 2.10e-04 | -2.132450 | 6.83e+00 | 6.51e+00 | 6.32e+00 | 4.72e-02 | 3.76e-02 | 3.30e-02 | 5.00e+00 | 3.70e+00 | 4.32e+00 | 1.30e-02 | 5.02e-03 | 7.94e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr10 | 98353069 | 98480271 | ENSG00000155629 | 0.4436 | - | PIK3AP1 | protein_coding | 1.89e-07 | 2.88e-04 | -2.163686 | 8.05e+00 | 8.31e+00 | 8.41e+00 | 4.51e-02 | 5.40e-02 | 5.81e-02 | 6.09e+00 | 6.27e+00 | 5.93e+00 | 1.14e-02 | 1.30e-02 | 1.03e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr19 | 46646363 | 46664556 | ENSG00000204866 | 0.4054 | + | IGFL2 | protein_coding | 2.37e-07 | 3.40e-04 | -2.400341 | 7.71e+00 | 7.48e+00 | 7.63e+00 | 1.48e-01 | 1.27e-01 | 1.40e-01 | 4.86e+00 | 5.17e+00 | 5.52e+00 | 1.99e-02 | 2.49e-02 | 3.20e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr7 | 75931861 | 75933612 | ENSG00000106211 | 0.6341 | + | HSPB1 | protein_coding | 3.27e-07 | 4.42e-04 | -1.824669 | 1.11e+01 | 1.08e+01 | 1.07e+01 | 7.13e-01 | 5.92e-01 | 5.47e-01 | 8.67e+00 | 9.08e+00 | 9.39e+00 | 1.31e-01 | 1.74e-01 | 2.17e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr15 | 78370150 | 78397251 | ENSG00000183476 | 0.4899 | + | SH2D7 | protein_coding | 4.18e-07 | 5.35e-04 | -3.541373 | 6.46e+00 | 5.36e+00 | 5.09e+00 | 3.36e-02 | 1.54e-02 | 1.27e-02 | 2.00e+00 | 1.00e+00 | 3.00e+00 | 1.16e-03 | 3.86e-04 | 2.70e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr13 | 110406184 | 110438915 | ENSG00000185950 | 0.4690 | - | IRS2 | protein_coding | 6.40e-07 | 7.80e-04 | 1.804461 | 7.63e+00 | 6.64e+00 | 7.65e+00 | 5.38e-02 | 2.70e-02 | 5.46e-02 | 9.02e+00 | 9.72e+00 | 8.57e+00 | 1.41e-01 | 2.30e-01 | 1.03e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr8 | 56685701 | 56738007 | ENSG00000137574 | 0.4002 | + | TGS1 | protein_coding | 7.72e-07 | 8.95e-04 | 2.072408 | 4.58e+00 | 5.55e+00 | 6.02e+00 | 1.76e-03 | 3.53e-03 | 4.91e-03 | 7.38e+00 | 7.83e+00 | 7.47e+00 | 1.27e-02 | 1.74e-02 | 1.35e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr6 | 158244296 | 158366109 | ENSG00000130340 | 0.4079 | + | SNX9 | protein_coding | 8.35e-07 | 9.24e-04 | -2.032768 | 7.52e+00 | 8.07e+00 | 8.25e+00 | 5.30e-02 | 7.80e-02 | 8.85e-02 | 5.91e+00 | 5.88e+00 | 6.04e+00 | 1.72e-02 | 1.69e-02 | 1.89e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 20301925 | 20306932 | ENSG00000188257 | 0.5214 | - | PLA2G2A | protein_coding | 1.03e-06 | 1.05e-03 | -1.960226 | 8.81e+00 | 8.41e+00 | 8.32e+00 | 1.69e-01 | 1.27e-01 | 1.20e-01 | 6.51e+00 | 6.30e+00 | 6.85e+00 | 3.38e-02 | 2.93e-02 | 4.28e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr15 | 78396948 | 78423886 | ENSG00000136425 | 0.5128 | - | CIB2 | protein_coding | 1.03e-06 | 1.05e-03 | -3.348728 | 6.46e+00 | 5.36e+00 | 5.09e+00 | 1.49e-02 | 6.85e-03 | 5.65e-03 | 2.00e+00 | 1.58e+00 | 3.17e+00 | 5.14e-04 | 3.43e-04 | 1.37e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr12 | 27676364 | 27848497 | ENSG00000110841 | 0.3981 | + | PPFIBP1 | protein_coding | 1.21e-06 | 1.17e-03 | -2.016384 | 7.94e+00 | 8.03e+00 | 8.18e+00 | 1.34e-02 | 1.43e-02 | 1.58e-02 | 6.09e+00 | 6.00e+00 | 6.02e+00 | 3.67e-03 | 3.45e-03 | 3.51e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr15 | 49170346 | 49170937 | ENSG00000235883 | 0.5676 | + | AC012379.1 | pseudogene | 2.00e-06 | 1.87e-03 | 1.962847 | 5.43e+00 | 5.00e+00 | 5.43e+00 | 3.51e-02 | 2.59e-02 | 3.51e-02 | 6.94e+00 | 7.50e+00 | 7.29e+00 | 1.02e-01 | 1.51e-01 | 1.30e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr4 | 79102020 | 79103200 | ENSG00000249565 | 0.5064 | - | SERBP1P5 | pseudogene | 3.34e-06 | 3.01e-03 | 1.800637 | 6.55e+00 | 5.78e+00 | 6.60e+00 | 7.78e-02 | 4.52e-02 | 8.03e-02 | 8.24e+00 | 8.50e+00 | 7.58e+00 | 2.52e-01 | 3.03e-01 | 1.60e-01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr15 | 74495046 | 74513896 | ENSG00000259264 | 0.5334 | + | RP11-60L3.1 | antisense | 3.64e-06 | 3.06e-03 | -3.584963 | 4.64e+00 | 4.09e+00 | 4.91e+00 | 5.02e-03 | 3.34e-03 | 6.06e-03 | 1.58e+00 | 0.00e+00 | 1.00e+00 | 4.18e-04 | 0.00e+00 | 2.09e-04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr12 | 52562780 | 52585784 | ENSG00000167767 | 0.5570 | - | KRT80 | protein_coding | 3.64e-06 | 3.06e-03 | -2.136419 | 7.58e+00 | 7.58e+00 | 7.22e+00 | 5.10e-02 | 5.13e-02 | 3.98e-02 | 5.78e+00 | 4.91e+00 | 5.17e+00 | 1.45e-02 | 7.79e-03 | 9.40e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr2 | 220238268 | 220264744 | ENSG00000123992 | 0.4881 | - | DNPEP | protein_coding | 5.61e-06 | 4.55e-03 | -1.763668 | 8.94e+00 | 8.75e+00 | 8.29e+00 | 2.55e-02 | 2.24e-02 | 1.62e-02 | 7.12e+00 | 6.52e+00 | 7.06e+00 | 7.18e-03 | 4.73e-03 | 6.87e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Download the DEG result list for Ldc10Ig3_vs_Ldc10Ig4.Download the whole result list for Ldc10Ig3_vs_Ldc10Ig4.DEG table for the contrast Con_vs_DoxThe following table presents the top 5% statistically significant genes (use the download links below the table to retrieve the whole list) for the contrast Con_vs_Dox. The fields of the table correspond to the requested features to be exported. The table can be searched using the search field on the top right. | chromosome | start | end | gene_id | gc_content | strand | gene_name | biotype | p-value_deseq | FDR_deseq | log2_normalized_fold_change_Con_vs_Dox | log2_normalized_counts_PH3R8-Con1 | log2_normalized_counts_PH3R9-Con2 | log2_normalized_counts_PH3R10-Con3 | rpgm_normalized_counts_PH3R8-Con1 | rpgm_normalized_counts_PH3R9-Con2 | rpgm_normalized_counts_PH3R10-Con3 | log2_normalized_counts_PH3R11-Dox1 | log2_normalized_counts_PH3R12-Dox2 | log2_normalized_counts_PH3R13-Dox3 | rpgm_normalized_counts_PH3R11-Dox1 | rpgm_normalized_counts_PH3R12-Dox2 | rpgm_normalized_counts_PH3R13-Dox3 | LN | AR | MD | MN | QN | KN | CM | BT |
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| chr1 | 159931008 | 159948851 | ENSG00000224259 | 0.4525 | + | LINC01133 | lincRNA | 4.70e-28 | 1.15e-23 | 5.528035 | 3.00e+00 | 1.58e+00 | 1.58e+00 | 2.93e-03 | 8.36e-04 | 8.36e-04 | 7.72e+00 | 7.88e+00 | 7.64e+00 | 8.78e-02 | 9.78e-02 | 8.32e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 151040657 | 151066726 | ENSG00000113140 | 0.4791 | - | SPARC | protein_coding | 1.86e-08 | 2.27e-04 | 2.378730 | 2.81e+00 | 7.48e+00 | 6.11e+00 | 6.15e-04 | 1.81e-02 | 6.97e-03 | 8.55e+00 | 9.87e+00 | 3.81e+00 | 3.82e-02 | 9.55e-02 | 1.33e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr6 | 132269316 | 132272513 | ENSG00000118523 | 0.5228 | - | CTGF | protein_coding | 1.91e-07 | 1.55e-03 | 1.842151 | 4.00e+00 | 7.86e+00 | 6.07e+00 | 6.57e-03 | 1.02e-01 | 2.89e-02 | 9.36e+00 | 8.84e+00 | 4.32e+00 | 2.86e-01 | 2.00e-01 | 8.32e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr1 | 119669162 | 119669914 | ENSG00000236804 | 0.4077 | - | RPS3AP12 | pseudogene | 7.37e-05 | 4.31e-01 | 2.338323 | 1.00e+00 | 4.70e+00 | 2.81e+00 | 8.36e-04 | 2.09e-02 | 5.02e-03 | 6.23e+00 | 6.60e+00 | 2.32e+00 | 6.19e-02 | 8.03e-02 | 3.34e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr5 | 96278003 | 96278888 | ENSG00000227836 | 0.4537 | + | AC008850.3 | pseudogene | 9.32e-05 | 4.31e-01 | 1.869819 | 4.09e+00 | 5.88e+00 | 5.21e+00 | 1.34e-02 | 4.85e-02 | 3.01e-02 | 6.97e+00 | 7.99e+00 | 5.04e+00 | 1.04e-01 | 2.12e-01 | 2.68e-02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chr11 | 6452279 | 6463847 | ENSG00000110169 | 0.4781 | - | HPX | protein_coding | 1.06e-04 | 4.31e-01 | -3.222392 | 0.00e+00 | 2.81e+00 | 4.32e+00 | 0.00e+00 | 5.94e-04 | 1.88e-03 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0.00e+00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | | chrX | 46147451 | 46148563 | ENSG00000229145 | 0.5490 | - | ACTBP1 | pseudogene | 1.65e-04 | 5.74e-01 | 1.823970 | 0.00e+00 | 6.15e+00 | 5.29e+00 | 0.00e+00 | 5.85e-02 | 3.18e-02 | 7.48e+00 | 7.67e+00 | 3.46e+00 | 1.49e-01 | 1.69e-01 | 8.36e-03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Download the DEG result list for Con_vs_Dox.Download the whole result list for Con_vs_Dox.Download the raw read counts table for the experiment.Download the normalized read counts table for the experiment.
References
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