samplename filename condition paired stranded PH3R-neg1 /data/images/proton/PHlab/run324/PH3R-neg1.bam group1 single forward PH3R-neg2 /data/images/proton/PHlab/run324/PH3R-neg2.bam group1 single forward PH3R-neg3 /data/images/proton/PHlab/run324/PH3R-neg3.bam group1 single forward PH3R-Ig3-1 /data/images/proton/PHlab/run324/PH3R-Ig3-1.bam group2 single forward PH3R-Ig3-2 /data/images/proton/PHlab/run324/PH3R-Ig3-2.bam group2 single forward PH3R-Ig3-3 /data/images/proton/PHlab/run324/PH3R-Ig3-3.bam group2 single forward