[12:00:31] Loading reference annotation.
[12:00:32] Inspecting maps and determining fragment length distributions.
[12:01:14] Modeling fragment count overdispersion.
[12:02:18] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 1557839.21
>	Raw Map Mass: 1296266.33
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 1557839.21
>	Raw Map Mass: 2117236.58
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 1557839.21
>	Raw Map Mass: 1467831.68
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 1557839.21
>	Raw Map Mass: 1504476.75
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[12:03:22] Calculating preliminary abundance estimates
[12:03:22] Testing for differential expression and regulation in locus.
Processed 21117 loci.                       
Performed 8320 isoform-level transcription difference tests
Performed 8157 tss-level transcription difference tests
Performed 8076 gene-level transcription difference tests
Performed 7897 CDS-level transcription difference tests
Performed 0 splicing tests
Performed 0 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info