THREADS=8
sem --id `hostname` -j $THREADS "cat xaa | java -Xmx500m    -cp "/data/results/tools/align/jvarkit/jvarkit/htsjdk-1.128/dist/commons-jexl-2.1.1.jar:/data/results/tools/align/jvarkit/jvarkit/htsjdk-1.128/dist/commons-logging-1.1.1.jar:/data/results/tools/align/jvarkit/jvarkit/htsjdk-1.128/dist/htsjdk-1.128.jar:/data/results/tools/align/jvarkit/jvarkit/htsjdk-1.128/dist/snappy-java-1.0.3-rc3.jar:/data/results/tools/align/jvarkit/jvarkit/dist-1.128/biostar59647.jar" com.github.lindenb.jvarkit.tools.biostar.Biostar59647  -r ../backbone_wo_insert.fa xaa  ref:9-20 | xmllint --format - |awk -f /data/images/proton/run149/extract_insert1.awk > xaa.ins"
cp xaa xaa.foo
rm xaa
for i in x??
do
echo $i;
date
sem --id `hostname`  -j $THREADS "cat ../header.txt $i > $i.tmp; cat $i.tmp | java -Xmx500m    -cp "/data/results/tools/align/jvarkit/jvarkit/htsjdk-1.128/dist/commons-jexl-2.1.1.jar:/data/results/tools/align/jvarkit/jvarkit/htsjdk-1.128/dist/commons-logging-1.1.1.jar:/data/results/tools/align/jvarkit/jvarkit/htsjdk-1.128/dist/htsjdk-1.128.jar:/data/results/tools/align/jvarkit/jvarkit/htsjdk-1.128/dist/snappy-java-1.0.3-rc3.jar:/data/results/tools/align/jvarkit/jvarkit/dist-1.128/biostar59647.jar" com.github.lindenb.jvarkit.tools.biostar.Biostar59647  -r ../backbone_wo_insert.fa $i.tmp  ref:9-20 | xmllint --format - |awk -f /data/images/proton/run149/extract_insert1.awk > $i.ins"
done
sem  --id `hostname`  --wait