Dear George,

the processing of the recent 2 samples has finished, results are in the folder:
http://genomics-lab.fleming.gr/fleming/external/Sketas/run454

The alignments are in the bam files:
GSkP7_A.bam   9235460 (48.65%) aligned reads
GSkP8_b.bam  31433915 (73.96%) aligned reads

The extracted insert sequences are in:
GSkP7_A.fa
GSkP8_b.fa

The table combining the number of reads in each sample for each insert is in insert_samples_sorted.csv .
As 2798911 different inserts are in this table, this cannot be viewed in Excel.
A subset containing only inserts that have at least a total of 2 reads in both samples (837158 inserts)
is in the table insert_samples_sorted_at_least_2_reads_total.xlsx

Please let me know if you need additional information.
Looking forward to the downstream results,
best wishes,

Martin