>>>>> 25 Read-Name : ZF7IF:09258:11243 Flag : 16 16 : read reverse strand MAPQ : 0 Contig : bb_wo_ins (index:0) Start : 3,811 End : 3,905 Strand : <-- Read-Length : 98 Cigar : 14M2I5M2I13M1I25M1D26M1D10M (N=11) Sequence : Read (0) : ACACTTTGCA AAGCAAATTA GACATTTTTT GTCCATAAAG ATTAGCGGAT CCTGCCTGAC Middle : Ref (3,811) : NNNNNNNNNN NNNN--NNNN N--NNNNNNN NNNNNN-NNN NNNNNNNNNN NNNNNNNNNN Cigar-Operator : MMMMMMMMMM MMMMIIMMMM MIIMMMMMMM MMMMMMIMMM MMMMMMMMMM MMMMMMMMMM Qual : +175.7777. 6363(33)63 -...%..... .63883(355 86<:77478. ,..85777:8 Ref-Pos : 3811 3821 3829 3837 3846 3856 Read (60) : GG-TTTTGCC GCGACTCTCT ATAATTTCT- CATACCTGTT Middle : Ref (3,866) : NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN Cigar-Operator : MMDMMMMMMM MMMMMMMMMM MMMMMMMMMD MMMMMMMMMM Qual : 14 (66773: 7788::877/ //*<1>98/ //9/)/-,), Ref-Pos : 3866 3876 3886 3896 Tags : MD : 19C0A36^T26^C10 "String for mismatching positions" XG : 7 "Reserved for end users" NM : 9 "Edit distance to the reference" XM : 2 "Reserved for end users" XN : 0 "Reserved for end users" XO : 5 "Reserved for end users" AS : -51 "Alignment score generated by aligner" YT : UU "Reserved for end users" <<<<< 25 >>>>> 26 Read-Name : ZF7IF:06000:09662 Flag : 16 16 : read reverse strand MAPQ : 42 Contig : bb_wo_ins (index:0) Start : 3,798 End : 3,900 Strand : <-- Read-Length : 102 Cigar : 97M1D5M (N=3) Sequence : Read (0) : TTAGCACAGC GTCACACTTT GCAAAGCATT AGCATTTTTG TCCATAAGAT TAGCGGATCC Middle : Ref (3,798) : NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN Cigar-Operator : MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM Qual : 3-----4-35 555;<:74@9 993:997606 5863&33333 50:;<9>=<7 <==:7::=8: Ref-Pos : 3798 3808 3818 3828 3838 3848 Read (60) : TGCCTGACGG TTTTTGCCGC GACTCTCTAT AATTTCT-CA TAC Middle : Ref (3,858) : NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNN Cigar-Operator : MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMDMM MMM Qual : :;599:::55 '555773955 78:::55755 /8/777/ // 9:: Ref-Pos : 3858 3868 3878 3888 3898 Tags : MD : 2T94^C5 "String for mismatching positions" XG : 1 "Reserved for end users" NM : 2 "Edit distance to the reference" XM : 1 "Reserved for end users" XN : 0 "Reserved for end users" XO : 1 "Reserved for end users" AS : -11 "Alignment score generated by aligner" YT : UU "Reserved for end users" <<<<< 26 >>>>> 27 Read-Name : ZF7IF:05655:11626 Flag : 16 16 : read reverse strand MAPQ : 0 Contig : bb_wo_ins (index:0) Start : 3,809 End : 3,922 Strand : <-- Read-Length : 120 Cigar : 28M2I10M1I48M1D8M1D14M5I4M (N=11) Sequence : Read (0) : TCACACTTTG CAAAGCATTA GCATTTTTTG GTCCATAAGA TTTAGCGGAT CCTGCCTGAC Middle : Ref (3,809) : NNNNNNNNNN NNNNNNNNNN NNNNNNNN-- NNNNNNNNNN -NNNNNNNNN NNNNNNNNNN Cigar-Operator : MMMMMMMMMM MMMMMMMMMM MMMMMMMMII MMMMMMMMMM IMMMMMMMMM MMMMMMMMMM Qual : 5557770777 80879997=9 9;7,7776.* ..3:..*94. (555:72566 6;::58878: Ref-Pos : 3809 3819 3829 3837 3856 Read (60) : GGTTTTTGCC GCGACTCTCT ATAATTTCT- CATACCTG-T TTTCTGGATG GAGTAAACCA Middle : Ref (3,866) : NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNN-----NN Cigar-Operator : MMMMMMMMMM MMMMMMMMMM MMMMMMMMMD MMMMMMMMDM MMMMMMMMMM MMMIIIIIMM Qual : 58,:::9956 767///7755 55/5*9985 55883885 ) 5555:5::;7 :995*880>; Ref-Pos : 3866 3876 3886 3896 3906 3916 Read (118) : TG Middle : Ref (3,921) : NN Cigar-Operator : MM Qual : ;< Ref-Pos : 3921 Tags : MD : 86^C8^T14T1A1 "String for mismatching positions" XG : 10 "Reserved for end users" NM : 12 "Edit distance to the reference" XM : 2 "Reserved for end users" XN : 0 "Reserved for end users" XO : 5 "Reserved for end users" AS : -63 "Alignment score generated by aligner" YT : UU "Reserved for end users" <<<<< 27 >>>>> 28 Read-Name : ZF7IF:03667:05146 Flag : 0 MAPQ : 0 Contig : bb_wo_ins (index:0) Start : 1 End : 118 Strand : --> Read-Length : 122 Cigar : 4M2I23M1I18M1I31M1I16M1D25M (N=11) Sequence : Read (0) : CCAAGTGGTT AAAGTTATCG GTCGTCGTTA CCCTCGGAGT GCAAAGAAGT ATTTGATATT Middle : Ref (1) : NNNN--NNNN NNNNNNNNNN NNNNNNNNN- NNNNNNNNNN NNNNNNNN-N NNNNNNNNNN Cigar-Operator : MMMMIIMMMM MMMMMMMMMM MMMMMMMMMI MMMMMMMMMM MMMMMMMMIM MMMMMMMMMM Qual : 8/5/55:6:7 =<0855;;;= 7<55/688)- ,4),,93768 :///)07)// 999/788775 Ref-Pos : 1 9 19 28 38 47 Read (60) : GGTCTTCCCC AAGACCATAA TTTTTCTGCT AGCCAAT-GG GCGATCGCCC ACAATTCGCC Middle : Ref (57) : NNNNNNNNNN NNNNNNNNNN -NNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN Cigar-Operator : MMMMMMMMMM MMMMMMMMMM IMMMMMMMMM MMMMMMMDMM MMMMMMMMMM MMMMMMMMMM Qual : :40//3777* 0)5::6:55/ 5555'586/0 ///4;59 9: 3:5555::?4 :8:*-)--6) Ref-Pos : 57 67 86 96 106 Read (119) : AAT Middle : Ref (116) : NNN Cigar-Operator : MMM Qual : -)- Ref-Pos : 116 Tags : MD : 3T88^G9G8G0C0T0T2G0 "String for mismatching positions" XG : 6 "Reserved for end users" NM : 13 "Edit distance to the reference" XM : 7 "Reserved for end users" XN : 0 "Reserved for end users" XO : 5 "Reserved for end users" AS : -65 "Alignment score generated by aligner" YT : UU "Reserved for end users" <<<<< 28 >>>>> 29 Read-Name : ZF7IF:06936:14559 Flag : 0 MAPQ : 40 Contig : bb_wo_ins (index:0) Start : 1 End : 111 Strand : --> Read-Length : 113 Cigar : 4M2I107M (N=3) Sequence : Read (0) : CCAAGTGGTT AAAGTTATCG GTCGTCGTTC CCTCGGAGTG CAAAGAATAT TTGATATTGG Middle : Ref (1) : NNNN--NNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN Cigar-Operator : MMMMIIMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM Qual : /)/)//6265 ><*//)//98 38?><< ?8<<<<>181 Ref-Pos : 1 9 19 29 39 49 Read (60) : TCTTCCCCAA GACCATAATT TTCTGCTAGC CAATGGGGCG ATCGCCCACA ATA Middle : Ref (59) : NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNN Cigar-Operator : MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM MMM Qual : 8::4:<<3<9 <<>8::8/55 5)5::888:9 596::::099 888755/5;> 79+ Ref-Pos : 59 69 79 89 99 109 Tags : MD : 3T98G7T0 "String for mismatching positions" XG : 2 "Reserved for end users" NM : 5 "Edit distance to the reference" XM : 3 "Reserved for end users" XN : 0 "Reserved for end users" XO : 1 "Reserved for end users" AS : -20 "Alignment score generated by aligner" YT : UU "Reserved for end users" <<<<< 29 >>>>> 30 Read-Name : ZF7IF:05186:14522 Flag : 0 MAPQ : 0 Contig : bb_wo_ins (index:0) Start : 1 End : 203 Strand : --> Read-Length : 232 Cigar : 4M2I18M1I40M1I8M1I40M21I70M2I6M1I17M (N=15) Sequence : Read (0) : CCAAGTGGTT AAAGTTATCG GTCGTTCGTT CCCTCGGAGT GCAAAGAATA TTTGATATTG Middle : Ref (1) : NNNN--NNNN NNNNNNNNNN NNNN-NNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN Cigar-Operator : MMMMIIMMMM MMMMMMMMMM MMMMIMMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM Qual : 8/56999596 ::35505:<: 65555/5::/ 55*58717// /99:1:;795 55*5:::;07 Ref-Pos : 1 9 19 28 38 48 Read (60) : GTCTTCCCCC AAGACCCATA ATTTTCTGCT AGCCAATGGG GCGATCGCCC ACAATTGCCG Middle : Ref (58) : NNNNN-NNNN NNNN-NNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNN----- Cigar-Operator : MMMMMIMMMM MMMMIMMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM MMMMMIIIII Qual : /598/5555' 5/5555*5:: /555)55559 5557;79999 /888::99:2 88:5:5;<7; Ref-Pos : 58 67 76 86 96 106 Read (120) : GTGGTTCTGG TGGGGGTGCT TAAGTTTTGG CACCGAAATT TTAACCGTTG AGTACGGCCC Middle : Ref (111) : ---------- ------NNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN Cigar-Operator : IIIIIIIIII IIIIIIMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM Qual : 7::4:688:6 ;<<<=.==>= 8<7:9991;7 ;;=6;;@6<< <1;6;6;=9= <<:<<<7<=3 Ref-Pos : 115 125 135 145 Read (180) : ATTGCCCATT GGCAAAATTG TGAGTGCAAA GAAATTTAAT TGTTCTGTGT AC Middle : Ref (155) : NNNNNNNNNN NNNNNNNNNN NNNNNN--NN NNNN-NNNNN NNNNNNNNNN NN Cigar-Operator : MMMMMMMMMM MMMMMMMMMM MMMMMMIIMM MMMMIMMMMM MMMMMMMMMM MM Qual : :86766+8;7 =388<<4<6: :;<;;6677* 7:;)77.66< 6;;6;<:7// // Ref-Pos : 155 165 175 183 192 202 Tags : MD : 3T98G100 "String for mismatching positions" XG : 29 "Reserved for end users" NM : 31 "Edit distance to the reference" XM : 2 "Reserved for end users" XN : 0 "Reserved for end users" XO : 7 "Reserved for end users" AS : -130 "Alignment score generated by aligner" YT : UU "Reserved for end users" <<<<< 30 >>>>> 31 Read-Name : ZF7IF:04921:09810 Flag : 0 MAPQ : 0 Contig : bb_wo_ins (index:0) Start : 2 End : 102 Strand : --> Read-Length : 104 Cigar : 3M2I33M3I50M1D4M1D9M (N=9) Sequence : Read (0) : CAAGTGGTTA AAGTTATCGG TCGTCGTTCC CTCGGAGTCG GCCGAAGAAT ATTTGATGAT Middle : Ref (2) : NNN--NNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNN-- -NNNNNNNNN NNNNNNNNNN Cigar-Operator : MMMIIMMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMII IMMMMMMMMM MMMMMMMMMM Qual : //)//72727 9/7969?<<7 ;5555;;7<> 7<::)///// )/305/55/5 888/7///,, Ref-Pos : 2 10 20 30 47 Read (60) : GGTCTTCCCC AAGACCATAT TTTCCTGCTA G-CAAT-GGG CGATCG Middle : Ref (57) : NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNN Cigar-Operator : MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM MDMMMMDMMM MMMMMM Qual : ,2,-/)///* /39::/5555 55)5/58888 5 5/36 66( ,,,,,, Ref-Pos : 57 67 77 87 97 Tags : MD : 2T33G1A13A0T20A3T7^C4^G9 "String for mismatching positions" XG : 7 "Reserved for end users" NM : 14 "Edit distance to the reference" XM : 7 "Reserved for end users" XN : 0 "Reserved for end users" XO : 4 "Reserved for end users" AS : -63 "Alignment score generated by aligner" YT : UU "Reserved for end users" <<<<< 31 >>>>> 32 Read-Name : ZF7IF:05969:14866 Flag : 0 MAPQ : 23 Contig : bb_wo_ins (index:0) Start : 1 End : 118 Strand : --> Read-Length : 120 Cigar : 4M2I114M (N=3) Sequence : Read (0) : CCAAGTGGTT AAAGTTATCG GTCGTCGTTC CCTCGGAGTG CAAAGAATAT TTGATATTGG Middle : Ref (1) : NNNN--NNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN Cigar-Operator : MMMMIIMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM Qual : /)/)/793:7 ><5<>6>;<< 7<><<<<<6< =499;15599 :::4:<8=<< <7<<<<<6;6 Ref-Pos : 1 9 19 29 39 49 Read (60) : TCTTCCCCAA GACCATAATT TTCTGCTAGC CAATGGGGCG ATCGCCCACA ATACTGGACT Middle : Ref (59) : NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN Cigar-Operator : MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM Qual : ;;;8===3;6 9><50/04;A A0;::;<>88 0807677(75 9:::980774 (****4.66, Ref-Pos : 59 69 79 89 99 109 Tags : MD : 3T98G7T0G0C0T0T1A0G0 "String for mismatching positions" XG : 2 "Reserved for end users" NM : 11 "Edit distance to the reference" XM : 9 "Reserved for end users" XN : 0 "Reserved for end users" XO : 1 "Reserved for end users" AS : -36 "Alignment score generated by aligner" YT : UU "Reserved for end users" <<<<< 32 >>>>> 33 Read-Name : ZF7IF:06656:09854 Flag : 0 MAPQ : 23 Contig : bb_wo_ins (index:0) Start : 1 End : 101 Strand : --> Read-Length : 105 Cigar : 4M2I26M1I59M1I12M (N=7) Sequence : Read (0) : CCAAGTGGTT AAAGTTATCG GTCGTCGTTC CCGTCGGAGT GCAAAGAATA TTTGATATTG Middle : Ref (1) : NNNN--NNNN NNNNNNNNNN NNNNNNNNNN NN-NNNNNNN NNNNNNNNNN NNNNNNNNNN Cigar-Operator : MMMMIIMMMM MMMMMMMMMM MMMMMMMMMM MMIMMMMMMM MMMMMMMMMM MMMMMMMMMM Qual : 6)/)/74263 66069*/099 5:::98:8/5 5*58773855 5:=<6/757)5 /5::798859 88/8555888 8374),---' ---66 Ref-Pos : 58 68 78 88 97 Tags : MD : 3T97 "String for mismatching positions" XG : 4 "Reserved for end users" NM : 5 "Edit distance to the reference" XM : 1 "Reserved for end users" XN : 0 "Reserved for end users" XO : 3 "Reserved for end users" AS : -29 "Alignment score generated by aligner" YT : UU "Reserved for end users" <<<<< 33 >>>>> 34 Read-Name : ZF7IF:08897:05222 Flag : 0 MAPQ : 0 Contig : bb_wo_ins (index:0) Start : 1 End : 129 Strand : --> Read-Length : 130 Cigar : 4M2I23M1I86M2D14M (N=7) Sequence : Read (0) : CCAAGTGGTT AAAGTTATCG GTCGTCGTTC CCCTCGGAGT GCAAAGAATA TTTGATATTG Middle : Ref (1) : NNNN--NNNN NNNNNNNNNN NNNNNNNNN- NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN Cigar-Operator : MMMMIIMMMM MMMMMMMMMM MMMMMMMMMI MMMMMMMMMM MMMMMMMMMM MMMMMMMMMM Qual : ((((((4.40 <=,486;;A? 8<>;;<;;08 77)5886::; <;;=4;:4:; 882:<=<<7< Ref-Pos : 1 9 19 28 38 48 Read (60) : GTCTTCCCCA AGACCATAAT TTTCTGCTAG CCAATGGGGC GATCGCCCAC AATTGC--CA Middle :