THREADS=4

#t
#for i in  xab xad xae xaf xag xah xbd xby xca xck xcm xcn xco xcq xcr 
#n1
#for i in  xab xac xad xae xag xah xai xbb xcd xcf xch xcn xcs xcw xcz xda xdb xdf xdi
#n0
#for i in xel xeq xes xet xeu xev xew xex xey xez xfa xfb
for i in x*
#for i in  xay  xba  xbc  xbe  xbg  xbi  xbk  xbm  xbo  xbq  xbs  xbu xax  xaz  xbb  xbd  xbf  xbh  xbj  xbl  xbn  xbp  xbr  xbt  xbv
#for i in   xab  xac  xad  xae  xaf  xag  xah  xai  xaj  xak  xal  xam  xan  xao  xap  xaq  xar  xas  xat  xau  xav  xaw
#	 for i in xab xac xad xae xaf xai xam xao xap xaq xar xas xat xax xay xaz xba xbb xbc xbf xbg xbh xbi xbj xbk xbl xbm xbn xbo xbp xbq xbr xbv xbw xbx xbz xcb xcd xcf xcg xch xci xcj xck xcl xcm xcn xco xcp xcq xcr xcs xcu xcv xcw xcx xcz xda xdb xdc xdd xdg xdh xdi xdj xdk xdl xdm xdn xdo xdp xds xdt xdu xdv xdw xdx xdy xea xee xef xeg xeh xei xej xek xel xeq xes xet xeu xev xew xex
do
echo $i;
date
sem --id `hostname`  -j $THREADS "cat backbone_wo_insert.dict $i | java -Djvarkit.log.name=biostar59647 -Dfile.encoding=UTF8 -Xmx500m     -cp "/mnt/fix/b/solid.data_results.recovered.data/tools/align/jvarkit/jvarkit-master/htsjdk-8dd4559dced3a243dde094415a9974c03aceb3e3/dist/apache-ant-1.8.2-bzip2.jar:/mnt/fix/b/solid.data_results.recovered.data/tools/align/jvarkit/jvarkit-master/htsjdk-8dd4559dced3a243dde094415a9974c03aceb3e3/dist/commons-compress-1.4.1.jar:/mnt/fix/b/solid.data_results.recovered.data/tools/align/jvarkit/jvarkit-master/htsjdk-8dd4559dced3a243dde094415a9974c03aceb3e3/dist/commons-jexl-2.1.1.jar:/mnt/fix/b/solid.data_results.recovered.data/tools/align/jvarkit/jvarkit-master/htsjdk-8dd4559dced3a243dde094415a9974c03aceb3e3/dist/commons-logging-1.1.1.jar:/mnt/fix/b/solid.data_results.recovered.data/tools/align/jvarkit/jvarkit-master/htsjdk-8dd4559dced3a243dde094415a9974c03aceb3e3/dist/htsjdk-2.1.1.jar:/mnt/fix/b/solid.data_results.recovered.data/tools/align/jvarkit/jvarkit-master/htsjdk-8dd4559dced3a243dde094415a9974c03aceb3e3/dist/ngs-java-1.2.2.jar:/mnt/fix/b/solid.data_results.recovered.data/tools/align/jvarkit/jvarkit-master/htsjdk-8dd4559dced3a243dde094415a9974c03aceb3e3/dist/snappy-java-1.0.3-rc3.jar:/mnt/fix/b/solid.data_results.recovered.data/tools/align/jvarkit/jvarkit-master/htsjdk-8dd4559dced3a243dde094415a9974c03aceb3e3/dist/xz-1.5.jar:/mnt/fix/b/solid.data_results.recovered.data/tools/align/jvarkit/jvarkit-master/lib/commons-cli/commons-cli/1.3.1/commons-cli-1.3.1.jar:/mnt/fix/b/solid.data_results.recovered.data/tools/align/jvarkit/jvarkit-master/lib/org/slf4j/slf4j-api/1.7.13/slf4j-api-1.7.13.jar:/mnt/fix/b/solid.data_results.recovered.data/tools/align/jvarkit/jvarkit-master/lib/org/slf4j/slf4j-simple/1.7.13/slf4j-simple-1.7.13.jar:/mnt/fix/b/solid.data_results.recovered.data/tools/align/jvarkit/jvarkit-master/dist/biostar59647.jar" com.github.lindenb.jvarkit.tools.biostar.Biostar59647  -r backbone_wo_insert.fa foo  ref:9-20 | xmllint --format - |awk -f /data/images/proton/run149/extract_insert1.awk > $i.ins"
done
sem  --id `hostname`  --wait
rm x??.tmp


#xab xac xad xae xaf xai xam xao xap xaq xar xas xat xax xay xaz xba xbb xbc xbf xbg xbh xbi xbj xbk xbl xbm xbn xbo xbp xbq xbr xbv xbw xbx xbz xcb xcd xcf xcg xch xci xcj xck xcl xcm xcn xco xcp xcq xcr xcs xcu xcv xcw xcx xcz xda xdb xdc xdd xdg xdh xdi xdj xdk xdl xdm xdn xdo xdp xds xdt xdu xdv xdw xdx xdy xea xee xef xeg xeh xei xej xek xel xeq xes xet xeu xev xew