GM-untr-0h-a,SCAN-untr-0h-a
./cuffdiff-untr_VS_tr_wt_hg19.sh: line 32:  2967 Segmentation fault      cuffdiff -L ${LABELS[i]},${LABELS[j]} --no-effective-length-correction --library-type fr-secondstrand --no-update-check --num-threads $THREADS -q -o cuffdiff_${LABELS[i]}_vs_${LABELS[j]} ../merged_asm/merged.gtf ../bams/${LABELS[$i]}.bam2,../bams/${LABELS[$i+1]}.bam2 ../bams/${LABELS[$j]}.bam2,../bams/${LABELS[$j+1]}.bam2 &>cuffdiff_${LABELS[i]}_vs_${LABELS[j]}.log
awk: /data/results/tools/rnaseq/filter-cuffdiff-genes2.awk:11: fatal: cannot open file `gene_exp.diff' for reading (No such file or directory)
reading biotypes from /data/images/proton/run90/pairings/merged_asm/merged-biotypes.txt