[14:11:36] Loading reference annotation.
[14:11:51] Inspecting maps and determining fragment length distributions.
[14:49:56] Modeling fragment count overdispersion.
[14:52:55] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 31586497.41
>	Raw Map Mass: 25973074.91
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31586497.41
>	Raw Map Mass: 36740670.86
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31586497.41
>	Raw Map Mass: 30881037.09
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31586497.41
>	Raw Map Mass: 35329517.92
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31586497.41
>	Raw Map Mass: 31165959.41
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31586497.41
>	Raw Map Mass: 32579890.37
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31586497.41
>	Raw Map Mass: 31165959.41
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31586497.41
>	Raw Map Mass: 32579890.37
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[14:54:05] Calculating preliminary abundance estimates
[14:54:05] Testing for differential expression and regulation in locus.
Processed 46399 loci.                       
Performed 89498 isoform-level transcription difference tests
Performed 59279 tss-level transcription difference tests
Performed 25316 gene-level transcription difference tests
Performed 32753 CDS-level transcription difference tests
Performed 0 splicing tests
Performed 0 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info