[10:31:30] Loading reference annotation.
[10:31:48] Inspecting maps and determining fragment length distributions.
[11:15:21] Modeling fragment count overdispersion.
[11:18:48] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 32597904.78
>	Raw Map Mass: 33977477.43
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 32597904.78
>	Raw Map Mass: 37346042.25
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 32597904.78
>	Raw Map Mass: 26229914.09
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 32597904.78
>	Raw Map Mass: 32171773.19
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 32597904.78
>	Raw Map Mass: 32460064.53
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 32597904.78
>	Raw Map Mass: 41534625.18
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 32597904.78
>	Raw Map Mass: 30045909.98
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 32597904.78
>	Raw Map Mass: 31905024.79
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[11:20:11] Calculating preliminary abundance estimates
[11:20:11] Testing for differential expression and regulation in locus.
Processed 44340 loci.                       
Performed 96256 isoform-level transcription difference tests
Performed 63411 tss-level transcription difference tests
Performed 27306 gene-level transcription difference tests
Performed 36605 CDS-level transcription difference tests
Performed 0 splicing tests
Performed 0 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info