[16:41:51] Loading reference annotation.
[16:42:14] Inspecting maps and determining fragment length distributions.
[17:00:25] Modeling fragment count overdispersion.
[17:01:32] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 34245760.04
>	Raw Map Mass: 31165959.41
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 34245760.04
>	Raw Map Mass: 32579890.37
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 34245760.04
>	Raw Map Mass: 32663151.85
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 34245760.04
>	Raw Map Mass: 41276944.57
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[17:02:38] Calculating preliminary abundance estimates
[17:02:38] Testing for differential expression and regulation in locus.
Processed 46399 loci.                       
Performed 104620 isoform-level transcription difference tests
Performed 68685 tss-level transcription difference tests
Performed 30231 gene-level transcription difference tests
Performed 37031 CDS-level transcription difference tests
Performed 0 splicing tests
Performed 0 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info