[16:34:13] Loading reference annotation.
[16:34:46] Inspecting maps and determining fragment length distributions.
[16:56:48] Modeling fragment count overdispersion.
[16:58:30] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 30929457.10
>	Raw Map Mass: 30881037.09
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 30929457.10
>	Raw Map Mass: 35329517.92
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 30929457.10
>	Raw Map Mass: 26388722.71
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 30929457.10
>	Raw Map Mass: 32285664.54
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[17:00:15] Calculating preliminary abundance estimates
[17:00:15] Testing for differential expression and regulation in locus.
Processed 46399 loci.                       
Performed 96075 isoform-level transcription difference tests
Performed 63277 tss-level transcription difference tests
Performed 27212 gene-level transcription difference tests
Performed 35309 CDS-level transcription difference tests
Performed 0 splicing tests
Performed 0 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info