[20:17:08] Loading reference annotation.
[20:17:23] Inspecting maps and determining fragment length distributions.
[20:29:54] Modeling fragment count overdispersion.
[20:31:00] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 31204881.25
>	Raw Map Mass: 25973074.91
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31204881.25
>	Raw Map Mass: 36740670.86
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31204881.25
>	Raw Map Mass: 31165959.41
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31204881.25
>	Raw Map Mass: 32579890.37
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[20:32:07] Calculating preliminary abundance estimates
[20:32:07] Testing for differential expression and regulation in locus.
Processed 46399 loci.                       
Performed 93953 isoform-level transcription difference tests
Performed 61331 tss-level transcription difference tests
Performed 25929 gene-level transcription difference tests
Performed 33929 CDS-level transcription difference tests
Performed 0 splicing tests
Performed 0 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info