[20:28:36] Loading reference annotation.
[20:28:51] Inspecting maps and determining fragment length distributions.
[20:45:29] Modeling fragment count overdispersion.
[20:46:35] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 31883419.53
>	Raw Map Mass: 33977477.43
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31883419.53
>	Raw Map Mass: 37346042.25
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31883419.53
>	Raw Map Mass: 26229914.09
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31883419.53
>	Raw Map Mass: 32171773.19
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[20:47:41] Calculating preliminary abundance estimates
[20:47:41] Testing for differential expression and regulation in locus.
Processed 44340 loci.                       
Performed 92856 isoform-level transcription difference tests
Performed 61767 tss-level transcription difference tests
Performed 26683 gene-level transcription difference tests
Performed 35287 CDS-level transcription difference tests
Performed 0 splicing tests
Performed 0 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info