/data/images/proton/run90/pairings/bams/SCAN-untr-0h.-merged.bam /data/images/proton/run90/pairings/0h_VS_1h_scan/cuffdiff_SCAN-tr-0h-a_vs_SCAN-tr-1h-a/gene_exp.diff.minlen100.biotype-top100-expressed_SCAN-tr-0h.bed "SCAN-untr-0h-TOP100-DOWN" /data/images/proton/run90/pairings/bams/SCAN-tr-0h.-merged.bam /data/images/proton/run90/pairings/0h_VS_1h_scan/cuffdiff_SCAN-tr-0h-a_vs_SCAN-tr-1h-a/gene_exp.diff.minlen100.biotype-top100-expressed_SCAN-tr-0h.bed "SCAN-tr-0h-TOP100-DOWN" /data/images/proton/run90/pairings/bams/SCAN-tr-1h.-merged.bam /data/images/proton/run90/pairings/0h_VS_1h_scan/cuffdiff_SCAN-tr-0h-a_vs_SCAN-tr-1h-a/gene_exp.diff.minlen100.biotype-top100-expressed_SCAN-tr-0h.bed "SCAN-tr-1h-TOP100-DOWN" /data/images/proton/run90/pairings/bams/SCAN-tr-3h.-merged.bam /data/images/proton/run90/pairings/0h_VS_1h_scan/cuffdiff_SCAN-tr-0h-a_vs_SCAN-tr-1h-a/gene_exp.diff.minlen100.biotype-top100-expressed_SCAN-tr-0h.bed "SCAN-tr-3h-TOP100-DOWN"