[14:17:05] Loading reference annotation.
[14:17:21] Inspecting maps and determining fragment length distributions.
[14:31:39] Modeling fragment count overdispersion.
[14:32:45] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 31582379.84
>	Raw Map Mass: 26305627.93
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31582379.84
>	Raw Map Mass: 37533333.80
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31582379.84
>	Raw Map Mass: 31545866.65
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 31582379.84
>	Raw Map Mass: 32598331.35
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[14:33:53] Calculating preliminary abundance estimates
[14:33:53] Testing for differential expression and regulation in locus.
Processed 43970 loci.                       
Performed 93173 isoform-level transcription difference tests
Performed 61170 tss-level transcription difference tests
Performed 26400 gene-level transcription difference tests
Performed 34203 CDS-level transcription difference tests
Performed 0 splicing tests
Performed 0 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info