#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
#Sampling to smallest library containing3084434 reads
ln -s . hg19
echo MF3R8_OFF2.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh MF3R8_OFF2.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 0.465948
echo MF3R10_3d2.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh MF3R10_3d2.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 0.59046
echo MF3R7_OFF1_bc35.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh MF3R7_OFF1.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 0.442467
echo MF3R9_3d1_bc37.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh MF3R9_3d1.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 0.55344
echo MF3R11_6d1.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh MF3R11_6d1.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 1
echo MF3R12_6d2.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig2.sh MF3R12_6d2.bam /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome 1