Dear Martin, 

@ runs Ion 348-351 you will find Euaggelia's 11 Chipseq samples as well as Maroussa's 6 ChIPseq samples (ION 350-351).

Euaggelia, please advise Martin how to perform the analysis for Maroussa's samples.

Martin please note @ run Ion 351, wrong bc assignment:
ITC270-Mar7 is BC14
ITC271-Mar8 is BC15
ITC272-Mar-Imput7 is BC16
ITC273-Mar-Imput8 is BC17

Thank you,
Vaggelis


Dear Euaggelia,
at 
http://genomics-lab.fleming.gr/cgi-bin/hgTracks?db=mm10&hubUrl=http://genomics-lab.fleming.gr/fleming/ITlab/run350/hub.txt
you will find tracks for all samples integrated in our UCSC genome browser mirror.
These tracks are sampled to smallest library (ITC260-ko1unt  with  12480032 reads).
Sample           n_reads
ITC257-wt2unt    14160860
ITC258-wt3unt    23955227
ITC259-wt4unt    12718866
ITC260-ko1unt    12480032
ITC261-ko3unt    13536832
ITC262-ko4unt    23221491
ITC263-wt1DENTCP 19774197
ITC264-wt3DENTCP 19455597
ITC265-ko2DENTCP 12491967
ITC266-ko3DENTCP 15302652
ITC267-ko4DENTCP 15512398

At http://genomics-lab.fleming.gr/fleming/ITlab/run350
are the bam files for further analysis.

Best wishes,
Martin