#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
#Sampling to smallest library containing9030918 reads
ln -s . mm10
echo ITRC25-wt1.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh ITRC25-wt1.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.mm10.fai 1
echo ITRC26-ko1A.bam
/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh ITRC26-ko1A.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.mm10.fai 0.7457