Report for Auto_user_IONAS-346-ITLab_170515_ITR53-54_ITRC26_449

Library Summary

Based on Predicted Per-Base Quality Scores - Independent of Alignment

Total Number of Bases [Mbp]8,011.09
‣ Number of Q20 Bases [Mbp]6,689.83
Total Number of Reads70,377,280
Mean Length [bp]113
Longest Read [bp]379

Reference Genome Information

Based on Full Library Alignment to Provided Reference

AQ20Perfect
Total Number of Bases [Mbp]0.000.00
Mean Length [bp]00
Longest Alignment [bp]00

Test Fragment Report

Test Fragment Summary

Test FragmentPercent (50AQ17 / Num)
TF_190%
TF_C97%

Test Fragment - TF_1

Quality Metrics

TF NameTF_1
TF SeqGAATAATCCAGCCCGCCAGGCATGGAAGAGCGTCGTAAAGTATTGCAGGT TCAGGCGGCGGAAAGCGTGATTGACTACTGGCAAATAAAGTACGTTCCAC CTTTGACACCATTTTCCGTAGTGAACTGACGCTGCCAAACGCCGACCGCG
Num387,965
Avg Q17 read length133
50AQ17350,832

Graphs

Test Fragment - TF_C

Quality Metrics

TF NameTF_C
TF SeqTACGAGCGTGTAGACGTGTCGTACGTGCGACGTAGTGAGTATACATGCTC TGACACTATGTACGATCTGAGACTGCCAAGGCACACAGGGGATAGG
Num652,655
Avg Q17 read length92
50AQ17632,277

Graphs

Ion Sphere™ Particle (ISP) Identification Summary

CountPercentage
Total Addressable Wells148,155,732
Wells with ISPs 122,996,037 83%
Live ISPs122,939,617 100%
Test Fragment ISPs1,066,568 <1%
Library ISPs121,873,049 99%
CountPercentage
Library ISPs / Percent Enrichment121,873,049 100%
Filtered: Polyclonal32,451,780 27%
Filtered: Primer dimer48,958 <1%
Filtered: Low quality20,116,679 17%
Final Library Reads70,379,439 58%

Report Information

Analysis Info

Run Name R_2017_05_16_14_59_10_user_IONAS-346-ITLab_170515_ITR53-54_ITRC26
Run Date 2017-05-16 12:02:20+00:00
Run Flows 520
Project ITLab_uRNA,ITLab_RNASeq
Sample ITR53-Set9ko3
Library N/A
Reference
Instrument IONAS
Flow Order TACGTACGTCTGAGCATCGATCGATGTACAGC
Library Key TCAG
TF Key ATCG
Chip Check Passed
Chip Type P1.1.17
Chip Data tiled
Notes ITlab_7RNAseqSamples_ITRC2EPsamples
Barcode Set IonXpressRNA
Analysis Name Auto_user_IONAS-346-ITLab_170515_ITR53-54_ITRC26_449
Analysis Date 2017-05-16
runID T0X5Q

Software Version

Torrent_Suite5.0.5
hostFW7DQV1
ion-analysis5.0.13-1
ion-chefupdates5.0.7
ion-dbreports5.0.34-1
ion-gpu5.0.0-1
ion-pipeline5.0.17-1
ion-plugins5.0.28-1
ion-protonupdates5.0.3
ion-torrentr5.0.0-1