Dear Evaggelia
at 
http://genomics-lab.fleming.gr/cgi-bin/hgTracks?db=mm10&hubUrl=http://genomics-lab.fleming.gr/fleming/ITlab/run336/hub.txt
are tracks for the libraries:
library               n_reads
ITC243-wt3-Usp        17733381 
ITC244-wt4-Usp        11759139 
ITC245-wt1DENTCP-Usp  11671124 
ITC246-wt2DENTCP-Usp  8732091 
ITC247-wt3DENTCP-Usp  14247053 
ITC236-wt1DENTCP-H2   14861190 
ITC237-ko1DENTCP-H2   16569700 
ITC238-ko2DENTCP-H2   32225598 
ITC239-Tg1-H2         23392134 
ITC240-Tg2-H2         19954084 
ITC241-Tg3-H2         20353612 
ITC242-Tg4-H2         24146368 
ITC232-wt3-H2         20639207 
ITC233-wt4-H2         23982205 
ITC234-ko2-H2         19160644 
ITC235-ko3-H2         18831364 

The tracks are sampled to the smallest library containing 8732091 reads.
At http://genomics-lab.fleming.gr/fleming/ITlab/run336 are the bam files for each library.

Best wishes,
Martin