#@

Dear Martin,

we would also like to compare these new RNAseq data with the previous ones ''ITlab run299''.

Specifically we want :

a) IT3R23-26 (4 WT untreated samples) vs IT3R49-IT3R53 (5 WT DENTCP samples)  

b) IT3R27-30 (4 KO untreated samples) vs IT3R54-IT3R58 (5 KO DENTCP samples)

Βest
Evaggelia
#@

Dear Evanggelia,

at
http://genomics-lab.fleming.gr/cgi-bin/hgTracks?db=mm10&hubUrl=http://genomics-lab.fleming.gr/fleming/ITlab/run329/hub.txt
you'll find tracks, normalized to the smallest library (IT3R58-ko7 with 1488048 reads).

At
http://genomics-lab.fleming.gr/fleming/ITlab/run329/metaseqr_quantseq_wt_vs_ko/index.html
is the metaseqR analysis for the contrast wt vs ko (wt is the reference).
Let me known if you need additional contrasts.

Best wishes,
Martin



sample     n_reads
IT3R49-wt1 4292833 
IT3R50-wt3 3700750 
IT3R51-wt4 3705100 
IT3R52-wt6 4740856 
IT3R53-wt7 2599816 
IT3R54-ko1 5836320 
IT3R55-ko3 4893272 
IT3R56-ko4 5230261 
IT3R57-ko6 4290827 
IT3R58-ko7 1488048