#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
#Sampling to smallest library containing5311453 reads
ln -s . mm10
echo ITRC11-wt2EU.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITRC11-wt2EU.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.793097
echo ITRC12-wt2bioUTP.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITRC12-wt2bioUTP.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.689055
echo ITRC13-wt2brUTP.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITRC13-wt2brUTP.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 1