#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
#Sampling to smallest library containing7194064 reads
echo ITC171-1.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC171-1.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.352514
echo ITC172-2.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC172-2.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.610529
echo ITC173-3.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC173-3.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.40371
echo ITC174-4.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC174-4.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.353772
echo ITC175-5.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC175-5.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 1
echo ITC176-6.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC176-6.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.645577
echo ITC177-7.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC177-7.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.502447
echo ITC178-8.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC178-8.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.375232