#!/bin/bash
PATH=/data/results/tools/bedtools/bedtools2/bin:$PATH; export PATH
#Sampling to smallest library containing13922800 reads
echo ITC155-FOXAIS1.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC155-FOXAIS1.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.866282
echo ITC156-FOXAIS2.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC156-FOXAIS2.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.912252
echo ITC157-FOXAPO1.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC157-FOXAPO1.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 1
echo ITC158-FOXAPO2.bam
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC158-FOXAPO2.bam /data/results/reference/mmu/mm10/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa.fai 0.824325