run299evangelia
proton/ITlab/run299evangelia/cuffdiff_ko_vs_koTCP/cufflinks_report.html
papageorgopoulou@fleming.gr

Dear Evaggelia,

the reports for the contrasts:
is at http://genomics-lab.fleming.gr/fleming/ITlab/run299evangelia/cuffdiff_ko_vs_koTCP/cufflinks_report.html    
is at http://genomics-lab.fleming.gr/fleming/ITlab/run299evangelia/cuffdiff_wtTCP_vs_koTCP/cufflinks_report.html 
is at http://genomics-lab.fleming.gr/fleming/ITlab/run299evangelia/cuffdiff_wt_vs_ko/cufflinks_report.html	  

From there, you can browse UCSC tracks,
get the tables with gene and isoform expression
and inspect plots for quality control.

Let us know if you need anything else.

Best wishes,
Martin