[20:33:27] Loading reference annotation.
[20:33:30] Inspecting maps and determining fragment length distributions.
[20:36:37] Modeling fragment count overdispersion.
[20:38:39] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 4028912.71
>	Raw Map Mass: 4951125.43
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 4028912.71
>	Raw Map Mass: 3126278.97
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 4028912.71
>	Raw Map Mass: 5157441.32
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 4028912.71
>	Raw Map Mass: 4019455.53
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 4028912.71
>	Raw Map Mass: 3287065.03
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 4028912.71
>	Raw Map Mass: 4402294.99
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[20:39:47] Calculating preliminary abundance estimates
[20:39:47] Testing for differential expression and regulation in locus.
Processed 59471 loci.                       
Performed 30641 isoform-level transcription difference tests
Performed 27797 tss-level transcription difference tests
Performed 22408 gene-level transcription difference tests
Performed 0 CDS-level transcription difference tests
Performed 0 splicing tests
Performed 0 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info