[18:23:22] Loading reference annotation.
[18:23:25] Inspecting maps and determining fragment length distributions.
[18:26:38] Modeling fragment count overdispersion.
[18:28:40] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 3897852.14
>	Raw Map Mass: 4951125.43
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3897852.14
>	Raw Map Mass: 3126278.97
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3897852.14
>	Raw Map Mass: 5157441.32
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3897852.14
>	Raw Map Mass: 4019455.53
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3897852.14
>	Raw Map Mass: 4095092.58
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3897852.14
>	Raw Map Mass: 4418263.64
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3897852.14
>	Raw Map Mass: 3036966.45
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3897852.14
>	Raw Map Mass: 3334044.96
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[18:30:43] Calculating preliminary abundance estimates
[18:30:43] Testing for differential expression and regulation in locus.
Processed 59471 loci.                       
Performed 30560 isoform-level transcription difference tests
Performed 27601 tss-level transcription difference tests
Performed 21995 gene-level transcription difference tests
Performed 0 CDS-level transcription difference tests
Performed 2505 splicing tests
Performed 4103 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info