Evaggelia

papageorgopoulou@fleming.gr
(teresarubio07@gmail.com)
Teresa Rubio
rubio@fleming.gr


Dear Theresa and Evaggelia,

the reports for the contrasts:
GBM_vs_GBF is at http://genomics-lab.fleming.gr/fleming/ITlab/run298theresa/cuffdiff_GBM_vs_GBF/cufflinks_report.html
GBF_vs_LF is at http://genomics-lab.fleming.gr/fleming/ITlab/run298theresa/cuffdiff_GBF_vs_LF/cufflinks_report.html
GBM_vs_LM is at http://genomics-lab.fleming.gr/fleming/ITlab/run298theresa/cuffdiff_GBM_vs_LM/cufflinks_report.html
LM_vs_LF is at http://genomics-lab.fleming.gr/fleming/ITlab/run298theresa/cuffdiff_LM_vs_LF/cufflinks_report.html


From there, you can browse UCSC tracks,
get the tables with gene and isoform expression
and inspect plots for quality control.

Let us know if you need anything else.

Best wishes,
Martin


#@



Yes, these samples are correct.
Thank you,

Evaggelia

papageorgopoulou@fleming.gr


Στάλθηκε από το smartphone Samsung Galaxy.
-------- Αρχικό μήνυμα --------
Από: Martin Reczko <reczko@fleming.gr>
Ημερομηνία: 13/07/2016 13:43 (GMT+02:00)
Προς: papageorgopoulou@fleming.gr
Θέμα: sample groups


Dear Evangelia,

can you please confirm the correct groups for the last 2 samples in:

IT3R1-wt1LM.bam2 = LM
IT3R2-wt2LM.bam2 = LM
IT3R3-wt3LM.bam2 = LM
IT3R4-wt4LM.bam2 = LM
IT3R5-wt1LF.bam2 = LF
IT3R6-wt2LF.bam2 = LF
IT3R7-wt3LF.bam2 = LF
IT3R8-wt4LF.bam2 = LF
IT3R17-1GBM.bam2 = GBM
IT3R18-9GBM.bam2 = GBM
IT3R19-8GBF.bam2 = GBF
IT3R20-12GBF.bam2 = GBF
IT3R21-5GBaM.bam2 = GBM ?
IT3R22-3GMaF.bam2 = GBF ?

Thank you,
Martin