[19:44:19] Loading reference annotation.
[19:44:22] Inspecting maps and determining fragment length distributions.
[19:47:38] Modeling fragment count overdispersion.
[19:49:39] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 3842632.71
>	Raw Map Mass: 4174255.19
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3842632.71
>	Raw Map Mass: 4830726.60
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3842632.71
>	Raw Map Mass: 3939271.19
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3842632.71
>	Raw Map Mass: 4283604.38
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3842632.71
>	Raw Map Mass: 3256492.75
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3842632.71
>	Raw Map Mass: 3592254.55
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3842632.71
>	Raw Map Mass: 3756424.73
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3842632.71
>	Raw Map Mass: 3411959.37
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[19:51:40] Calculating preliminary abundance estimates
[19:51:40] Testing for differential expression and regulation in locus.
Processed 63452 loci.                       
Performed 31188 isoform-level transcription difference tests
Performed 28263 tss-level transcription difference tests
Performed 22709 gene-level transcription difference tests
Performed 0 CDS-level transcription difference tests
Performed 2489 splicing tests
Performed 4123 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info