[16:35:27] Loading reference annotation.
[16:35:30] Inspecting maps and determining fragment length distributions.
[16:38:46] Modeling fragment count overdispersion.
[16:40:17] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 3903152.94
>	Raw Map Mass: 4203263.06
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3903152.94
>	Raw Map Mass: 2548485.92
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3903152.94
>	Raw Map Mass: 3365489.85
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3903152.94
>	Raw Map Mass: 4174255.19
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3903152.94
>	Raw Map Mass: 4830726.60
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3903152.94
>	Raw Map Mass: 3939271.19
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3903152.94
>	Raw Map Mass: 4283604.38
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[16:42:14] Calculating preliminary abundance estimates
[16:42:14] Testing for differential expression and regulation in locus.
Processed 63452 loci.                       
Performed 35812 isoform-level transcription difference tests
Performed 32724 tss-level transcription difference tests
Performed 26773 gene-level transcription difference tests
Performed 0 CDS-level transcription difference tests
Performed 2500 splicing tests
Performed 4271 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info