[18:37:53] Loading reference annotation.
[18:37:56] Inspecting maps and determining fragment length distributions.
[18:40:30] Modeling fragment count overdispersion.
[18:42:20] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 3851247.94
>	Raw Map Mass: 4203263.06
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3851247.94
>	Raw Map Mass: 2548485.92
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3851247.94
>	Raw Map Mass: 3365489.85
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3851247.94
>	Raw Map Mass: 4485961.45
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3851247.94
>	Raw Map Mass: 4808752.20
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 3851247.94
>	Raw Map Mass: 4663977.76
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[18:43:56] Calculating preliminary abundance estimates
[18:43:56] Testing for differential expression and regulation in locus.
Processed 63452 loci.                       
Performed 34774 isoform-level transcription difference tests
Performed 31845 tss-level transcription difference tests
Performed 25951 gene-level transcription difference tests
Performed 0 CDS-level transcription difference tests
Performed 2484 splicing tests
Performed 4291 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info