awk -v p="/data/images/proton/run298" -f /data/images/proton/link-bam-files-to-sample-ids1.awk ../samples.txt > link-bam-files.sh
( same as
reczko@max:/data/images/proton/run298/www$ ln -s /data/images/proton/run298/tophat_028/sort_uniq.bam IT3R17-1GBM.bam
reczko@max:/data/images/proton/run298/www$ ln -s /data/images/proton/run298/tophat_029/sort_uniq.bam IT3R18-9GBM.bam
reczko@max:/data/images/proton/run298/www$ ln -s /data/images/proton/run298/tophat_030/sort_uniq.bam IT3R19-8GBF.bam
reczko@max:/data/images/proton/run298/www$ ln -s /data/images/proton/run298/tophat_031/sort_uniq.bam IT3R20-12GBF.bam
reczko@max:/data/images/proton/run298/www$ ln -s /data/images/proton/run298/tophat_032/sort_uniq.bam IT3R21-5GBaM.bam
reczko@max:/data/images/proton/run298/www$ ln -s /data/images/proton/run298/tophat_033/sort_uniq.bam IT3R22-3GMaF.bam
reczko@max:/data/images/proton/run298/www$ ln -s /data/images/proton/run298/tophat_034/sort_uniq.bam IT3R23-wt6.bam
reczko@max:/data/images/proton/run298/www$ ln -s /data/images/proton/run298/tophat_035/sort_uniq.bam IT3R24-wt7.bam
reczko@max:/data/images/proton/run298/www$ ln -s /data/images/proton/run298/tophat_036/sort_uniq.bam IT3R25-wt8.bam
reczko@max:/data/images/proton/run298/www$ ln -s /data/images/proton/run298/tophat_037/sort_uniq.bam IT3R26-wt9.bam
reczko@max:/data/images/proton/run298/www$ ln -s /data/images/proton/run298/tophat_038/sort_uniq.bam IT3R27-ko4.bam
reczko@max:/data/images/proton/run298/www$ ln -s /data/images/proton/run298/tophat_039/sort_uniq.bam IT3R28-ko5.bam
reczko@max:/data/images/proton/run298/www$ ln -s /data/images/proton/run298/tophat_040/sort_uniq.bam IT3R29-ko6.bam
reczko@max:/data/images/proton/run298/www$ ln -s /data/images/proton/run298/tophat_041/sort_uniq.bam IT3R30-ko7.ba
m
)