[16:18:51] Loading reference annotation.
[16:18:54] Inspecting maps and determining fragment length distributions.
[16:22:09] Modeling fragment count overdispersion.
[16:24:12] Modeling fragment count overdispersion.
> Map Properties:
>	Normalized Map Mass: 4448454.28
>	Raw Map Mass: 4508626.80
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 4448454.28
>	Raw Map Mass: 6288421.56
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 4448454.28
>	Raw Map Mass: 3744971.28
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 4448454.28
>	Raw Map Mass: 4230607.70
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 4448454.28
>	Raw Map Mass: 5139278.67
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 4448454.28
>	Raw Map Mass: 3780068.92
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 4448454.28
>	Raw Map Mass: 3167992.89
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
> Map Properties:
>	Normalized Map Mass: 4448454.28
>	Raw Map Mass: 6419561.18
>	Fragment Length Distribution: Truncated Gaussian (default)
>	              Default Mean: 200
>	           Default Std Dev: 80
[16:26:16] Calculating preliminary abundance estimates
[16:26:16] Testing for differential expression and regulation in locus.
Processed 57907 loci.                       
Performed 27002 isoform-level transcription difference tests
Performed 24375 tss-level transcription difference tests
Performed 19501 gene-level transcription difference tests
Performed 0 CDS-level transcription difference tests
Performed 2242 splicing tests
Performed 3627 promoter preference tests
Performing 0 relative CDS output tests
Writing isoform-level FPKM tracking
Writing TSS group-level FPKM tracking
Writing gene-level FPKM tracking
Writing CDS-level FPKM tracking
Writing isoform-level count tracking
Writing TSS group-level count tracking
Writing gene-level count tracking
Writing CDS-level count tracking
Writing isoform-level read group tracking
Writing TSS group-level read group tracking
Writing gene-level read group tracking
Writing CDS-level read group tracking
Writing read group info
Writing run info