Report for Auto_user_IONAS-273-ITlab_KNRNAseq_160302_ITR49r-50_369


    Library Summary

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      Based on Predicted Per-Base Quality Scores - Independent of Alignment

Total Number of Bases [Mbp]	9,822.48
‣ Number of Q20 Bases [Mbp]	7,603.07
Total Number of Reads	89,704,381
Mean Length [bp]	109
Longest Read [bp]	378

<http://192.168.0.166/output/Home/Auto_user_IONAS-273-ITlab_KNRNAseq_160302_ITR49r-50_369_595/basecaller_results/readLenHisto.png>
<http://192.168.0.166/output/Home/Auto_user_IONAS-273-ITlab_KNRNAseq_160302_ITR49r-50_369_595/iontrace_Library.png>


      Reference Genome Information


      Based on Full Library Alignment to Provided Reference

	AQ20	Perfect
Total Number of Bases [Mbp]	0.00	0.00
Mean Length [bp]	0	0
Longest Alignment [bp]	0	0


    Test Fragment Report

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      Test Fragment Summary

*Test Fragment*	*Percent (50AQ17 / Num) *
TF_C	77%

<http://192.168.0.166/output/Home/Auto_user_IONAS-273-ITlab_KNRNAseq_160302_ITR49r-50_369_595/iontrace_Test_Fragment.png>


      Test Fragment - TF_C


        Quality Metrics

TF Name	TF_C
TF Seq	TACGAGCGTGTAGACGTGTCGTACGTGCGACGTAGTGAGTATACATGCTC
TGACACTATGTACGATCTGAGACTGCCAAGGCACACAGGGGATAGG
Num	1,385,443
Avg Q17 read length	71
50AQ17	1,070,639


        Graphs

<http://192.168.0.166/output/Home/Auto_user_IONAS-273-ITlab_KNRNAseq_160302_ITR49r-50_369_595/new_Q17_TF_C.png>


    Ion Sphere™ Particle (ISP) Identification Summary

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<http://192.168.0.166/output/Home/Auto_user_IONAS-273-ITlab_KNRNAseq_160302_ITR49r-50_369_595/Bead_density_contour.png>


    Report Information

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      Analysis Info

Run Name
R_2016_03_03_11_22_16_user_IONAS-273-ITlab_KNRNAseq_160302_ITR49r-50
Run Date 	2016-03-03 09:24:18+00:00
Run Flows 	520
Project 	ITLab_RNASeq
Sample 	ITR50-wt6
Library 	N/A
Reference 	
Instrument 	IONAS
Flow Order 	TACGTACGTCTGAGCATCGATCGATGTACAGC
Library Key 	TCAG
TF Key 	ATCG
Chip Check 	Passed
Chip Type 	P1.1.17
Chip Data 	tiled
Notes 	ITlab_2KNRNAseq_ITR49r-wt1-bc15_ITR50-wt6-bc16
Barcode Set 	IonXpressRNA
Analysis Name 	Auto_user_IONAS-273-ITlab_KNRNAseq_160302_ITR49r-50_369
Analysis Date 	2016-03-03
runID 	I9Q97


      Software Version

Torrent_Suite	*5.0.2*
host	FW7DQV1
ion-analysis	5.0.7-1
ion-chefupdates	5.0.1
ion-dbreports	5.0.19-1
ion-gpu	5.0.0-1
ion-pipeline	5.0.12-1
ion-plugins	5.0.17-1
ion-protonupdates	5.0.2
ion-torrentr	5.0.0-1


    File Links

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Developer link: Block stdout
<http://192.168.0.166/output/Home/Auto_user_IONAS-273-ITlab_KNRNAseq_160302_ITR49r-50_369_595/drmaa_stdout_block.txt>

Developer link: Block stderr
<http://192.168.0.166/output/Home/Auto_user_IONAS-273-ITlab_KNRNAseq_160302_ITR49r-50_369_595/drmaa_stderr_block.txt>

Developer link: std_out_err
<http://192.168.0.166/output/Home/Auto_user_IONAS-273-ITlab_KNRNAseq_160302_ITR49r-50_369_595/drmaa_stdout.txt>

Plugins <http://192.168.0.166/report/595>

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