#!/bin/bash
# Sampling to smallest library containing 10,094,538 reads
ln -s ../bowtie2_005/sort_uniq.bam ITC74-Set8ko1PHF8.bam   
ln -s ../bowtie2_006/sort_uniq.bam ITC75-Set8ko2PHF8.bam   
ln -s ../bowtie2_011/sort_uniq.bam ITC64-wt1PHF8.bam 	 
ln -s ../bowtie2_012/sort_uniq.bam ITC65-wt2PHF8.bam 	 

(/	23616217 13286420.0)
(/ 1 1.7774703042655584)
0.5625973033699682

	
(/ 13286420.0 		19722302)
0.6736749087403692

13286420 	
(/ 13286420.0	                  15144393 	)
0.8773161129666933


/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC74-Set8ko1PHF8.bam    /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.5625973033699682
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC75-Set8ko2PHF8.bam   /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.6736749087403692
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC64-wt1PHF8.bam 	 /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 1
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC65-wt2PHF8.bam 	 /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.8773161129666933