#/data/images/proton/bowtie2unstranded-sampled-pair-bigwig1.sh b1 /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome factor b2
/data/images/proton/bowtie2unstranded-sampled-pair-bigwig1.sh ITC70_Wt1Me3.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.6875349357182784 ITC70_Wt1Me3b.bam
/data/images/proton/bowtie2unstranded-sampled-pair-bigwig1.sh ITC71_Wt2Me3.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.5758426966292135 ITC71_Wt2Me3b.bam
/data/images/proton/bowtie2unstranded-sampled-pair-bigwig1.sh  ITC72_SetK01.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.5970873786407767  ITC72_SetK01b.bam
/data/images/proton/bowtie2unstranded-sampled-pair-bigwig1.sh  ITC73_SetK02.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.45606229143492777  ITC73_SetK02b.bam

/data/images/proton/bowtie2unstranded-sampled-bigwig1.sh  ITC74_SetK01.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.44890510948905116

ln -s ../../run197/bowtie2_005/sort_uniq.bam ITC74_SetK01.bam
reczko@max:/data/images/proton/run199/www$ /data/images/proton/bowtie2unstranded-sampled-bigwig1.sh  ITC74_SetK01.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.44890510948905116
ln -s ../../run197/bowtie2_006/sort_uniq.bam ITC75_SetK02.bam
/data/images/proton/bowtie2unstranded-sampled-bigwig1.sh  ITC75_SetK02.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.599123234291281
ln -s ../../run197/bowtie2_009/sort_uniq.bam ITC76_BL1Pol.bam
ln -s ../../run197/bowtie2_011/sort_uniq.bam ITC76_BL1Pol_b.bam
reczko@max:/data/images/proton/run199/www$ /data/images/proton/bowtie2unstranded-sampled-pair-bigwig1.sh  ITC76_BL1Pol.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.8081471747700394  ITC76_BL1Pol_b.bam
ln -s ../../run197/bowtie2_010/sort_uniq.bam ITC77_BL2Pol.bam
reczko@max:/data/images/proton/run199/www$ /data/images/proton/bowtie2unstranded-sampled-bigwig1.sh  ITC77_BL2Pol.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 1.0
ln -s ../../run196/bowtie2_011/sort_uniq.bam ITC79_BL1H4K91.bam
rm ITC79_BL1H4K91.bam
ln -s ../../run196/bowtie2_011/sort_uniq.bam ITC78_BL1H4K91.bam
ln -s ../../run196/bowtie2_012/sort_uniq.bam ITC79_BL2H4K91.bam
ln -s ../../run196/bowtie2_013/sort_uniq.bam ITC80_Tub1Pol.bam
ln -s ../../run196/bowtie2_014/sort_uniq.bam ITC81_Tub2Pol.bam
ln -s ../../run199/bowtie2_rmask_001/sort_uniq.bam ITC82_Tub1H4K91.bam
ln -s ../../run199/bowtie2_rmask_002/sort_uniq.bam ITC83_Tub2H4K91.bam
ln -s ../../run199/bowtie2_rmask_003/sort_uniq.bam ITC84_Tub1Smyd.bam
ln -s ../../run199/bowtie2_rmask_004/sort_uniq.bam ITC85_Tub2Smyd.bam
ln -s ../../run198/bowtie2_rmask_007/sort_uniq.bam ITC86_HTub1Smyd.bam
ln -s ../../run198/bowtie2_rmask_008/sort_uniq.bam ITC87_HTub2Smyd.bam
ln -s ../../run198/bowtie2_rmask_015/sort_uniq.bam ITC88_HTub1HSm.bam
ln -s ../../run198/bowtie2_rmask_016/sort_uniq.bam ITC89_HTub2HSm.bam
/data/images/proton/bowtie2unstranded-sampled-bigwig1.sh  ITC78_BL1H4K91.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.6840934371523916
/data/images/proton/bowtie2unstranded-sampled-bigwig1.sh  ITC79_BL2H4K91.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.6602254428341385
/data/images/proton/bowtie2unstranded-sampled-bigwig1.sh  ITC80_Tub1Pol.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.9220389805097452
reczko@max:/data/images/proton/run199/www$ /data/images/proton/bowtie2unstranded-sampled-bigwig1.sh  ITC81_Tub2Pol.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.743202416918429
/data/images/proton/bowtie2unstranded-sampled-bigwig1.sh  ITC82_Tub1H4K91.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.5933429811866859
/data/images/proton/bowtie2unstranded-sampled-bigwig1.sh  ITC83_Tub2H4K91.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.8823529411764707
/data/images/proton/bowtie2unstranded-sampled-bigwig1.sh  ITC84_Tub1Smyd.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.7869481765834933
/data/images/proton/bowtie2unstranded-sampled-bigwig1.sh  ITC85_Tub2Smyd.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.8932461873638345
/data/images/proton/bowtie2unstranded-sampled-bigwig1.sh  ITC86_HTub1Smyd.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.7966321243523317
/data/images/proton/bowtie2unstranded-sampled-bigwig1.sh  ITC87_HTub2Smyd.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.7620817843866171
/data/images/proton/bowtie2unstranded-sampled-bigwig1.sh  ITC88_HTub1HSm.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.7654013690105788
/data/images/proton/bowtie2unstranded-sampled-bigwig1.sh  ITC89_HTub2HSm.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.8249496981891349

ln -s ../../run197/bowtie2_010/sort_uniq.bam ITC77_BL2Pol.bam
reczko@max:/data/images/proton/run199/www$ ln -s ../../run193/bowtie2_001/sort_uniq.bam ITC70_Wt1Me3.bam
reczko@max:/data/images/proton/run199/www$ ln -s ../../run194/bowtie2_001/sort_uniq.bam ITC70_Wt1Me3b.bam
reczko@max:/data/images/proton/run199/www$ ln -s ../../run193/bowtie2_002/sort_uniq.bam ITC71_Wt2Me3.bam
reczko@max:/data/images/proton/run199/www$ ln -s ../../run194/bowtie2_002/sort_uniq.bam ITC71_Wt2Me3b.bam
reczko@max:/data/images/proton/run199/www$ ln -s ../../run193/bowtie2_003/sort_uniq.bam ITC72_SetK01.bam
reczko@max:/data/images/proton/run199/www$ ln -s ../../run194/bowtie2_003/sort_uniq.bam ITC72_SetK01b.bam
reczko@max:/data/images/proton/run199/www$ ln -s ../../run193/bowtie2_004/sort_uniq.bam ITC73_SetK02.bam
reczko@max:/data/images/proton/run199/www$ ln -s ../../run194/bowtie2_004/sort_uniq.bam ITC73_SetK02b.bam