#!/bin/bash
# Sampling to 15000000 reads

/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC58-wt1SET8.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.819289
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC65-wt2PHF8.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.737331
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC64-wt1PHF8.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.792579
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC59-wt2SET8.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.663139