#!/bin/bash
# Sampling to 15000000 reads

/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC48-wt1SET8.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.890437
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC44-wt1Input.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.612277
/data/results/tools/proton/tophat2unstranded-sampled-bigwig1.sh ITC49-wt2SET8.bam /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome 0.878763