#!/bin/bash

for i in *bam
do
#sc=$(echo "scale=15; $min/${MCR[ $i ]}" | bc) 
#echo $i ${MCR[ $i ]} $sc
#/data/results/tools/proton/tophat2stranded-sampled-bigwig1.sh $i /data/results/reference/hg19/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/hsa.hg19.genome $sc
/data/results/tools/proton/tophat2stranded-bigwig1.sh $i /data/results/reference/mmu/Mus_musculus/UCSC/mm9/Sequence/WholeGenomeFasta/mmu.mm9.genome
done