Peak file = Atac153_MAPQ30_summits.bak.bed
	Genome = hg19
	Organism = human
	Peak/BED file conversion summary:
		BED/Header formatted lines: 7313
		peakfile formatted lines: 0
		Duplicated Peak IDs: 0

	Peak File Statistics:
		Total Peaks: 7313
		Redundant Peak IDs: 0
		Peaks lacking information: 0 (need at least 5 columns per peak)
		Peaks with misformatted coordinates: 0 (should be integer)
		Peaks with misformatted strand: 0 (should be either +/- or 0/1)

	Peak file looks good!

	Reading Positions...
	-----------------------
	Finding Closest TSS...
	Annotating:........................
		Annotation	Number of peaks	Total size (bp)	Log2 Enrichment
		3UTR	84.0	21942417	0.695
		miRNA	0.0	48690	-12.836
		ncRNA	31.0	5144737	1.350
		TTS	115.0	28099294	0.791
		pseudo	5.0	1853996	0.190
		Exon	286.0	34376117	1.815
		Intron	3231.0	1194604745	0.194
		Intergenic	3382.0	1772914566	-0.310
		Promoter	169.0	31334283	1.190
		5UTR	10.0	2504844	0.756
		snoRNA	0.0	119	-12.836
		snRNA	0.0	105	-12.836
	NOTE: If this part takes more than 2 minutes, there is a good chance
		your machine ran out of memory: consider hitting ctrl+C and rerunning
		the command with "-noann"
	To capture annotation stats in a file, use "-annStats <filename>" next time
	Annotating:........................
		Annotation	Number of peaks	Total size (bp)	Log2 Enrichment
		3UTR	84.0	21942417	0.696
		Other	0.0	3960244	-12.836
		Unknown?	0.0	18108	-12.836
		RNA	1.0	115354	1.875
		miRNA	0.0	48690	-12.836
		ncRNA	31.0	5144737	1.351
		TTS	115.0	28099294	0.793
		LINE	809.0	624751319	-0.868
		LINE?	0.0	10448	-12.836
		srpRNA	2.0	254817	1.732
		SINE	540.0	381054362	-0.738
		RC	1.0	443678	-0.068
		tRNA	0.0	92966	-12.836
		DNA?	0.0	265124	-12.836
		pseudo	5.0	1853996	0.191
		DNA	201.0	96183032	-0.177
		Exon	286.0	34376117	1.816
		Intron	2191.0	634266076	0.548
		Intergenic	1989.0	903802268	-0.103
		Promoter	169.0	31334283	1.191
		5UTR	10.0	2504844	0.757
		snoRNA	0.0	119	-12.836
		LTR?	0.0	21177	-12.836
		scRNA	0.0	116795	-12.836
		CpG-Island	30.0	9344478	0.442
		Low_complexity	4.0	15504547	-3.195
		LTR	765.0	260433708	0.314
		Simple_repeat	21.0	24937179	-1.488
		snRNA	0.0	322793	-12.836
		Unknown	6.0	1252510	1.020
		SINE?	0.0	43068	-12.836
		Satellite	39.0	12377296	0.415
		rRNA	14.0	164735	5.169
	Counting Tags in Peaks from each directory...
	Organism: human
	Loading Gene Information...
	Outputing Annotation File...
	Done annotating peaks file